Publications
Showing records 1 - 20 (of 87)
Publication: JournalArticle (Originalarbeit in einer wissenschaftlichen Zeitschrift)
ID
Author
Year
Title
Publisher
4064974 Ding, Wei; Baumdicker, Franz; Neher, Richard A.
2017
panX: pan-genome analysis and exploration
Nucleic acids research
3729159 Neher, Richard A.; Bedford, Trevor
2015
nextflu: real-time tracking of seasonal influenza virus evolution in humans
Bioinformatics
4652088 Happi, Christian; Adetifa, Ifedayo; Mbala, Placide; Njouom, Richard; Nakoune, Emmanuel; Happi, Anise; Ndodo, Nnaemeka; Ayansola, Oyeronke; Mboowa, Gerald; Bedford, Trevor; Neher, Richard A.; Roemer, Cornelius; Hodcroft, Emma; Tegally, Houriiyah; O'Toole, Áine; Rambaut, Andrew; Pybus, Oliver; Kraemer, Moritz U. G.; Wilkinson, Eduan; Isidro, Joana; Borges, Vítor; Pinto, Miguel; Gomes, João Paulo; Freitas, Lucas; Resende, Paola C.; Lee, Raphael T. C.; Maurer-Stroh, Sebastian; Baxter, Cheryl; Lessells, Richard; Ogwell, Ahmed E.; Kebede, Yenew; Tessema, Sofonias K.; de Oliveira, Tulio
2022
Urgent need for a non-discriminatory and non-stigmatizing nomenclature for monkeypox virus
PLoS Biology
4484427 Sagulenko, Pavel; Puller, Vadim; Neher, Richard A.
2018
TreeTime: Maximum-likelihood phylodynamic analysis
Virus Evolution
4652086 Barrat-Charlaix, Pierre; Vaughan, Timothy G.; Neher, Richard A.
2022
TreeKnit: Inferring ancestral reassortment graphs of influenza viruses
PLoS Computational Biology
3868591 You, Yuan; Sawikowska, Aneta; Neumann, Manuela; Posé, David; Capovilla, Giovanna; Langenecker, Tobias; Neher, Richard A.; Krajewski, Pawel; Schmid, Markus
2017
Temporal dynamics of gene expression and histone marks at the Arabidopsis shoot meristem during flowering
Nature Communications
3729174 Schötz, Thomas; Neher, Richard A.; Gerland, Ulrich
2011
Target search on a dynamic DNA molecule
Physical Review E
4515725 Egli, Adrian; Koch, Daniel; Danuser, Jürg; Hendriksen, Rene S.; Driesen, Susanne; Schmid, Diana Coman; Neher, Richard; Mäusezahl, Mirjam; Seth-Smith, Helena M. B.; Bloemberg, Guido; Tschudin-Sutter, Sarah; Endimiani, Andrea; Perreten, Vincent; Greub, Gilbert; Schrenzel, Jacques; Stephan, Roger
2019
Symposium report: One Health meets sequencing
Microbes and Infection
4652448 Nadeau, Sarah A.; Vaughan, Timothy G.; Beckmann, Christiane; Topolsky, Ivan; Chen, Chaoran; Hodcroft, Emma; Schär, Tobias; Nissen, Ina; Santacroce, Natascha; Burcklen, Elodie; Ferreira, Pedro; Jablonski, Kim Philipp; Posada-Céspedes, Susana; Capece, Vincenzo; Seidel, Sophie; Santamaria de Souza, Noemi; Martinez-Gomez, Julia M.; Cheng, Phil; Bosshard, Philipp P.; Levesque, Mitchell P.; Kufner, Verena; Schmutz, Stefan; Zaheri, Maryam; Huber, Michael; Trkola, Alexandra; Cordey, Samuel; Laubscher, Florian; Gonçalves, Ana Rita; Aeby, Sébastien; Pillonel, Trestan; Jacot, Damien; Bertelli, Claire; Greub, Gilbert; Leuzinger, Karoline; Stange, Madlen; Mari, Alfredo; Roloff, Tim; Seth-Smith, Helena; Hirsch, Hans H.; Egli, Adrian; Redondo, Maurice; Kobel, Olivier; Noppen, Christoph; du Plessis, Louis; Beerenwinkel, Niko; Neher, Richard A.; Beisel, Christian; Stadler, Tanja
2022
Swiss public health measures associated with reduced SARS-CoV-2 transmission using genome data
Science Translational Medicine
4627396 Hodcroft, Emma B.; Zuber, Moira; Nadeau, Sarah; Vaughan, Timothy G.; Crawford, Katharine H. D.; Althaus, Christian L.; Reichmuth, Martina L.; Bowen, John E.; Walls, Alexandra C.; Corti, Davide; Bloom, Jesse D.; Veesler, David; Mateo, David; Hernando, Alberto; Comas, Iñaki; González-Candelas, Fernando; SeqCovid-Spain consortium,; Stadler, Tanja; Neher, Richard A.
2021
Spread of a SARS-CoV-2 variant through Europe in the summer of 2020
Nature
4627394 Konings, Frank; Perkins, Mark D.; Kuhn, Jens H.; Pallen, Mark J.; Alm, Erik J.; Archer, Brett N.; Barakat, Amal; Bedford, Trevor; Bhiman, Jinal N.; Caly, Leon; Carter, Lisa L.; Cullinane, Anne; de Oliveira, Tulio; Druce, Julian; El Masry, Ihab; Evans, Roger; Gao, George F.; Gorbalenya, Alexander E.; Hamblion, Esther; Herring, Belinda L.; Hodcroft, Emma; Holmes, Edward C.; Kakkar, Manish; Khare, Shagun; Koopmans, Marion P. G.; Korber, Bette; Leite, Juliana; MacCannell, Duncan; Marklewitz, Marco; Maurer-Stroh, Sebastian; Rico, Jairo Andres Mendez; Munster, Vincent J.; Neher, Richard; Munnink, Bas Oude; Pavlin, Boris I.; Peiris, Malik; Poon, Leo; Pybus, Oliver; Rambaut, Andrew; Resende, Paola; Subissi, Lorenzo; Thiel, Volker; Tong, Suxiang; van der Werf, Sylvie; von Gottberg, Anne; Ziebuhr, John; Van Kerkhove, Maria D.
2021
SARS-CoV-2 Variants of Interest and Concern naming scheme conducive for global discourse
Nature Microbiology
4627402 Goncalves Cabecinhas, Ana Rita; Roloff, Tim; Stange, Madlen; Bertelli, Claire; Huber, Michael; Ramette, Alban; Chen, Chaoran; Nadeau, Sarah; Gerth, Yannick; Yerly, Sabine; Opota, Onya; Pillonel, Trestan; Schuster, Tobias; Metzger, Cesar M. J. A.; Sieber, Jonas; Bel, Michael; Wohlwend, Nadia; Baumann, Christian; Koch, Michel C.; Bittel, Pascal; Leuzinger, Karoline; Brunner, Myrta; Suter-Riniker, Franziska; Berlinger, Livia; Søgaard, Kirstine K.; Beckmann, Christiane; Noppen, Christoph; Redondo, Maurice; Steffen, Ingrid; Seth-Smith, Helena M. B.; Mari, Alfredo; Lienhard, Reto; Risch, Martin; Nolte, Oliver; Eckerle, Isabella; Martinetti Lucchini, Gladys; Hodcroft, Emma B.; Neher, Richard A.; Stadler, Tanja; Hirsch, Hans H.; Leib, Stephen L.; Risch, Lorenz; Kaiser, Laurent; Trkola, Alexandra; Greub, Gilbert; Egli, Adrian
2021
SARS-CoV-2 N501Y Introductions and Transmissions in Switzerland from Beginning of October 2020 to February 2021-Implementation of Swiss-Wide Diagnostic Screening and Whole Genome Sequencing
Microorganisms
3729157 Hassouna, I.; Ott, C.; Wüstefeld, L.; Offen, N.; Neher, R. A.; Mitkovski, M.; Winkler, D.; Sperling, S.; Fries, L.; Goebbels, S.; Vreja, I. C.; Hagemeyer, N.; Dittrich, M.; Rossetti, M. F.; Kröhnert, K.; Hannke, K.; Boretius, S.; Zeug, A.; Höschen, C.; Dandekar, T.; Dere, E.; Neher, E.; Rizzoli, S. O.; Nave, K.-A.; Sirén, A.-L.; Ehrenreich, H.
2016
Revisiting adult neurogenesis and the role of erythropoietin for neuronal and oligodendroglial differentiation in the hippocampus
Molecular Psychiatry
3729177 Neher, Richard A.; Leitner, Thomas
2010
Recombination rate and selection strength in HIV intra-patient evolution
PLoS Computational Biology
4484435 Neher, Richard A.; Bedford, Trevor
2018
Real-time analysis and visualization of pathogen sequence data
Journal of clinical microbiology
3729178 Neher, R. A.; Shraiman, B. I.; Fisher, D. S.
2010
Rate of adaptation in large sexual populations
Genetics
3868593 Regenbogen, Bianca; Willmann, Matthias; Steglich, Matthias; Bunk, Boyke; Nübel, Ulrich; Peter, Silke; Neher, Richard A.
2017
Rapid and consistent evolution of colistin resistance in XDR Pseudomonas aeruginosa during morbidostat culture
Antimicrobial agents and chemotherapy
4515716 Cunrath, Olivier; Meinel, Dominik M.; Maturana, Pauline; Fanous, Joseph; Buyck, Julien M.; Saint Auguste, Pamela; Seth-Smith, Helena M. B.; Körner, Jonas; Dehio, Christoph; Trebosc, Vincent; Kemmer, Christian; Neher, Richard; Egli, Adrian; Bumann, Dirk
2019
Quantitative contribution of efflux to multi-drug resistance of clinical Escherichia coli and Pseudomonas aeruginosa strains
EBioMedicine
3729166 Mukherjee, Amrita; Neher, Richard A.; Renault, Andrew D.
2013
Quantifying the range of a lipid phosphate signal in vivo
Journal of Cell Science
3729167 Zanini, Fabio; Neher, Richard A.
2013
Quantifying selection against synonymous mutations in HIV-1 env evolution
Journal of virology
Showing records 1 - 20 (of 87)
