Publications
Showing records 1 - 20 (of 87)
Publication: JournalArticle (Originalarbeit in einer wissenschaftlichen Zeitschrift)
ID
Author
Year
Title
Publisher
3729161 Neher, Richard A.; Russell, Colin A.; Shraiman, Boris I.
2014
Predicting evolution from the shape of genealogical trees
eLife
4484429 Jackson, Laurelle; Hunter, Jessica; Cele, Sandile; Ferreira, Isabella Markham; Young, Andrew C.; Karim, Farina; Madansein, Rajhmun; Dullabh, Kaylesh J.; Chen, Chih-Yuan; Buckels, Noel J.; Ganga, Yashica; Khan, Khadija; Boulle, Mikael; Lustig, Gila; Neher, Richard A.; Sigal, Alex
2018
Incomplete inhibition of HIV infection results in more HIV infected lymph node cells by reducing cell death
eLife
3729154 Brodin, Johanna; Zanini, Fabio; Thebo, Lina; Lanz, Christa; Bratt, Göran; Neher, Richard A.; Albert, Jan
2016
Establishment and stability of the latent HIV-1 DNA reservoir
eLife
3729158 Zanini, Fabio; Brodin, Johanna; Thebo, Lina; Lanz, Christa; Bratt, Göran; Albert, Jan; Neher, Richard A.
2015
Population genomics of intrapatient HIV-1 evolution
eLife
4515730 Yan, Le; Neher, Richard A.; Shraiman, Boris I.
2019
Phylodynamic theory of persistence, extinction and speciation of rapidly adapting pathogens
eLife
4627388 Huddleston, John; Barnes, John R.; Rowe, Thomas; Xu, Xiyan; Kondor, Rebecca; Wentworth, David E.; Whittaker, Lynne; Ermetal, Burcu; Daniels, Rodney Stuart; McCauley, John W.; Fujisaki, Seiichiro; Nakamura, Kazuya; Kishida, Noriko; Watanabe, Shinji; Hasegawa, Hideki; Barr, Ian; Subbarao, Kanta; Barrat-Charlaix, Pierre; Neher, Richard A.; Bedford, Trevor
2020
Integrating genotypes and phenotypes improves long-term forecasts of seasonal influenza A/H3N2 evolution
eLife
4627347 Morris, Dylan H.; Petrova, Velislava N.; Rossine, Fernando W.; Parker, Edyth; Grenfell, Bryan T.; Neher, Richard A.; Levin, Simon A.; Russell, Colin A.
2020
Asynchrony between virus diversity and antibody selection limits influenza virus evolution
eLife
4652084 Huisman, Jana S.; Scire, Jérémie; Angst, Daniel C.; Li, Jinzhou; Neher, Richard A.; Maathuis, Marloes H.; Bonhoeffer, Sebastian; Stadler, Tanja
2022
Estimation and worldwide monitoring of the effective reproductive number of SARS-CoV-2
eLife
3868589 Zanini, Fabio; Puller, Vadim; Brodin, Johanna; Albert, Jan; Neher, Richard A.
2017
In vivo mutation rates and the landscape of fitness costs of HIV-1
Virus Evolution
4484427 Sagulenko, Pavel; Puller, Vadim; Neher, Richard A.
2018
TreeTime: Maximum-likelihood phylodynamic analysis
Virus Evolution
4627413 Puller, Vadim; Sagulenko, Pavel; Neher, Richard A.
2020
Efficient inference, potential, and limitations of site-specific substitution models
Virus Evolution
4523961 Potter, Barney I.; Kondor, Rebecca; Hadfield, James; Huddleston, John; Barnes, John; Rowe, Thomas; Guo, Lizheng; Xu, Xiyan; Neher, Richard A.; Bedford, Trevor; Wentworth, David E.
2019
Evolution and rapid spread of a reassortant A(H3N2) virus that predominated the 2017-2018 influenza season
Virus Evolution
4627386 Potter, Barney I.; Kondor, Rebecca; Hadfield, James; Huddleston, John; Barnes, John; Rowe, Thomas; Guo, Lizheng; Xu, Xiyan; Neher, Richard A.; Bedford, Trevor; Wentworth, David E.
2019
Evolution and rapid spread of a reassortant A(H3N2) virus that predominated the 2017-2018 influenza season
Virus Evolution
4515719 Dyrdak, Robert; Mastafa, Monika; Hodcroft, Emma B.; Neher, Richard A.; Albert, Jan
2019
Intra- and interpatient evolution of enterovirus D68 analyzed by whole-genome deep sequencing
Virus Evolution
4064977 Morris, Dylan H.; Gostic, Katelyn M.; Pompei, Simone; Bedford, Trevor; Łuksza, Marta; Neher, Richard A.; Grenfell, Bryan T.; Lässig, Michael; McCauley, John W.
2017
Predictive Modeling of Influenza Shows the Promise of Applied Evolutionary Biology
Trends in Microbiology
4484437 Javed, Mumina; Ueltzhoeffer, Viola; Heinrich, Maximilian; Siegrist, Hans Justus; Wildermuth, Ronja; Lorenz, Freia-Raphaella; Neher, Richard A.; Willmann, Matthias
2018
Colistin susceptibility test evaluation of multiple-resistance-level Pseudomonas aeruginosa isolates generated in a morbidostat device
The journal of antimicrobial chemotherapy
4607819 Neher, Richard A.; Dyrdak, Robert; Druelle, Valentin; Hodcroft, Emma B.; Albert, Jan
2020
Potential impact of seasonal forcing on a SARS-CoV-2 pandemic
Swiss Medical Weekly
4515710 Egli, Adrian; Blanc, Dominique S.; Greub, Gilbert; Keller, Peter M.; Lazarevic, Vladimir; Lebrand, Aitana; Leib, Stephen; Neher, Richard A.; Perreten, Vincent; Ramette, Alban; Schrenzel, Jacques; Stephan, Roger; Wagner, Karolin; Wuethrich, Daniel; Xenarios, Ioannis
2018
Improving the quality and workflow of bacterial genome sequencing and analysis: paving the way for a Switzerland-wide molecular epidemiological surveillance platform
Swiss Medical Weekly
4607821 Salathé, Marcel; Althaus, Christian L.; Neher, Richard; Stringhini, Silvia; Hodcroft, Emma; Fellay, Jacques; Zwahlen, Marcel; Senti, Gabriela; Battegay, Manuel; Wilder-Smith, Annelies; Eckerle, Isabella; Egger, Matthias; Low, Nicola
2020
COVID-19 epidemic in Switzerland: on the importance of testing, contact tracing and isolation
Swiss Medical Weekly
4652448 Nadeau, Sarah A.; Vaughan, Timothy G.; Beckmann, Christiane; Topolsky, Ivan; Chen, Chaoran; Hodcroft, Emma; Schär, Tobias; Nissen, Ina; Santacroce, Natascha; Burcklen, Elodie; Ferreira, Pedro; Jablonski, Kim Philipp; Posada-Céspedes, Susana; Capece, Vincenzo; Seidel, Sophie; Santamaria de Souza, Noemi; Martinez-Gomez, Julia M.; Cheng, Phil; Bosshard, Philipp P.; Levesque, Mitchell P.; Kufner, Verena; Schmutz, Stefan; Zaheri, Maryam; Huber, Michael; Trkola, Alexandra; Cordey, Samuel; Laubscher, Florian; Gonçalves, Ana Rita; Aeby, Sébastien; Pillonel, Trestan; Jacot, Damien; Bertelli, Claire; Greub, Gilbert; Leuzinger, Karoline; Stange, Madlen; Mari, Alfredo; Roloff, Tim; Seth-Smith, Helena; Hirsch, Hans H.; Egli, Adrian; Redondo, Maurice; Kobel, Olivier; Noppen, Christoph; du Plessis, Louis; Beerenwinkel, Niko; Neher, Richard A.; Beisel, Christian; Stadler, Tanja
2022
Swiss public health measures associated with reduced SARS-CoV-2 transmission using genome data
Science Translational Medicine
Showing records 1 - 20 (of 87)
