Publications
Showing records 1 - 20 (of 87)
Publication: JournalArticle (Originalarbeit in einer wissenschaftlichen Zeitschrift)
ID
Author
Year
Title
Publisher
4637535 Aksamentov, Ivan; Roemer, Cornelius; Hodcroft, Emma B.; Neher, Richard A.
2021
Nextclade: clade assignment, mutation calling and quality control for viral genomes
Journal of Open Source Software
4610104 Alm, Erik; Broberg, Eeva K.; Connor, Thomas; Hodcroft, Emma B.; Komissarov, Andrey B.; Maurer-Stroh, Sebastian; Melidou, Angeliki; Neher, Richard A.; O'Toole, Áine; Pereyaslov, Dmitriy
2020
Geographical and temporal distribution of SARS-CoV-2 clades in the WHO European Region, January to June 2020
Eurosurveillance
4627392 Barrat-Charlaix, Pierre; Huddleston, John; Bedford, Trevor; Neher, Richard A.
2021
Limited Predictability of Amino Acid Substitutions in Seasonal Influenza Viruses
Molecular Biology and Evolution
4652086 Barrat-Charlaix, Pierre; Vaughan, Timothy G.; Neher, Richard A.
2022
TreeKnit: Inferring ancestral reassortment graphs of influenza viruses
PLoS Computational Biology
4627410 Bedford, Trevor; Greninger, Alexander L.; Roychoudhury, Pavitra; Starita, Lea M.; Famulare, Michael; Huang, Meei-Li; Nalla, Arun; Pepper, Gregory; Reinhardt, Adam; Xie, Hong; Shrestha, Lasata; Nguyen, Truong N.; Adler, Amanda; Brandstetter, Elisabeth; Cho, Shari; Giroux, Danielle; Han, Peter D.; Fay, Kairsten; Frazar, Chris D.; Ilcisin, Misja; Lacombe, Kirsten; Lee, Jover; Kiavand, Anahita; Richardson, Matthew; Sibley, Thomas R.; Truong, Melissa; Wolf, Caitlin R.; Nickerson, Deborah A.; Rieder, Mark J.; Englund, Janet A.; Seattle Flu Study Investigators,; Hadfield, James; Hodcroft, Emma B.; Huddleston, John; Moncla, Louise H.; Müller, Nicola F.; Neher, Richard A.; Deng, Xianding; Gu, Wei; Federman, Scot; Chiu, Charles; Duchin, Jeffrey S.; Gautom, Romesh; Melly, Geoff; Hiatt, Brian; Dykema, Philip; Lindquist, Scott; Queen, Krista; Tao, Ying; Uehara, Anna; Tong, Suxiang; MacCannell, Duncan; Armstrong, Gregory L.; Baird, Geoffrey S.; Chu, Helen Y.; Shendure, Jay; Jerome, Keith R.
2020
Cryptic transmission of SARS-CoV-2 in Washington state
Science
4627398 Benschop, Kimberley S. M.; Broberg, Eeva K.; Hodcroft, Emma; Schmitz, Dennis; Albert, Jan; Baicus, Anda; Bailly, Jean-Luc; Baldvinsdottir, Gudrun; Berginc, Natasa; Blomqvist, Soile; Böttcher, Sindy; Brytting, Mia; Bujaki, Erika; Cabrerizo, Maria; Celma, Cristina; Cinek, Ondrej; Claas, Eric C. J.; Cremer, Jeroen; Dean, Jonathan; Dembinski, Jennifer L.; Demchyshyna, Iryna; Diedrich, Sabine; Dudman, Susanne; Dunning, Jake; Dyrdak, Robert; Emmanouil, Mary; Farkas, Agnes; De Gascun, Cillian; Fournier, Guillaume; Georgieva, Irina; Gonzalez-Sanz, Ruben; van Hooydonk-Elving, Jolanda; Jääskeläinen, Anne J.; Jancauskaite, Ruta; Keeren, Kathrin; Fischer, Thea K.; Krokstad, Sidsel; Nikolaeva-Glomb, Lubomira; Novakova, Ludmila; Midgley, Sofie E.; Mirand, Audrey; Molenkamp, Richard; Morley, Ursula; Mossong, Joël; Muralyte, Svajune; Murk, Jean-Luc; Nguyen, Trung; Nordbø, Svein A.; Österback, Riikka; Pas, Suzan; Pellegrinelli, Laura; Pogka, Vassiliki; Prochazka, Birgit; Rainetova, Petra; Van Ranst, Marc; Roorda, Lieuwe; Schuffenecker, Isabelle; Schuurman, Rob; Stoyanova, Asya; Templeton, Kate; Verweij, Jaco J.; Voulgari-Kokota, Androniki; Vuorinen, Tytti; Wollants, Elke; Wolthers, Katja C.; Zakikhany, Katherina; Neher, Richard; Harvala, Heli; Simmonds, Peter
2021
Molecular Epidemiology and Evolutionary Trajectory of Emerging Echovirus 30, Europe
Emerging infectious diseases
4627390 Boehm, Erik; Kronig, Ilona; Neher, Richard A.; Eckerle, Isabella; Vetter, Pauline; Kaiser, Laurent
2021
Novel SARS-CoV-2 variants: the pandemics within the pandemic
Clinical microbiology and infection
3729155 Boullé, Mikaël; Müller, Thorsten G.; Dähling, Sabrina; Ganga, Yashica; Jackson, Laurelle; Mahamed, Deeqa; Oom, Lance; Lustig, Gila; Neher, Richard A.; Sigal, Alex
2016
HIV Cell-to-Cell Spread Results in Earlier Onset of Viral Gene Expression by Multiple Infections per Cell
PLoS Pathogens
3729160 Brodin, Johanna; Hedskog, Charlotte; Heddini, Alexander; Benard, Emmanuel; Neher, Richard A.; Mild, Mattias; Albert, Jan
2015
Challenges with using primer IDs to improve accuracy of next generation sequencing
PLoS ONE
3729154 Brodin, Johanna; Zanini, Fabio; Thebo, Lina; Lanz, Christa; Bratt, Göran; Neher, Richard A.; Albert, Jan
2016
Establishment and stability of the latent HIV-1 DNA reservoir
eLife
3729176 Callahan, Benjamin; Neher, Richard A.; Bachtrog, Doris; Andolfatto, Peter; Shraiman, Boris I.
2011
Correlated evolution of nearby residues in Drosophilid proteins
PLoS Genetics
4515723 Carvajal-Yepes, M.; Cardwell, K.; Nelson, A.; Garrett, K. A.; Giovani, B.; Saunders, D. G. O.; Kamoun, S.; Legg, J. P.; Verdier, V.; Lessel, J.; Neher, R. A.; Day, R.; Pardey, P.; Gullino, M. L.; Records, A. R.; Bextine, B.; Leach, J. E.; Staiger, S.; Tohme, J.
2019
A global surveillance system for crop diseases
Science
4515716 Cunrath, Olivier; Meinel, Dominik M.; Maturana, Pauline; Fanous, Joseph; Buyck, Julien M.; Saint Auguste, Pamela; Seth-Smith, Helena M. B.; Körner, Jonas; Dehio, Christoph; Trebosc, Vincent; Kemmer, Christian; Neher, Richard; Egli, Adrian; Bumann, Dirk
2019
Quantitative contribution of efflux to multi-drug resistance of clinical Escherichia coli and Pseudomonas aeruginosa strains
EBioMedicine
4064974 Ding, Wei; Baumdicker, Franz; Neher, Richard A.
2017
panX: pan-genome analysis and exploration
Nucleic acids research
4627404 Dyrdak, Robert; Hodcroft, Emma B.; Wahlund, Martina; Neher, Richard A.; Albert, Jan
2021
Interactions between seasonal human coronaviruses and implications for the SARS-CoV-2 pandemic: A retrospective study in Stockholm, Sweden, 2009-2020
Journal of clinical virology
4515719 Dyrdak, Robert; Mastafa, Monika; Hodcroft, Emma B.; Neher, Richard A.; Albert, Jan
2019
Intra- and interpatient evolution of enterovirus D68 analyzed by whole-genome deep sequencing
Virus Evolution
4515710 Egli, Adrian; Blanc, Dominique S.; Greub, Gilbert; Keller, Peter M.; Lazarevic, Vladimir; Lebrand, Aitana; Leib, Stephen; Neher, Richard A.; Perreten, Vincent; Ramette, Alban; Schrenzel, Jacques; Stephan, Roger; Wagner, Karolin; Wuethrich, Daniel; Xenarios, Ioannis
2018
Improving the quality and workflow of bacterial genome sequencing and analysis: paving the way for a Switzerland-wide molecular epidemiological surveillance platform
Swiss Medical Weekly
4515725 Egli, Adrian; Koch, Daniel; Danuser, Jürg; Hendriksen, Rene S.; Driesen, Susanne; Schmid, Diana Coman; Neher, Richard; Mäusezahl, Mirjam; Seth-Smith, Helena M. B.; Bloemberg, Guido; Tschudin-Sutter, Sarah; Endimiani, Andrea; Perreten, Vincent; Greub, Gilbert; Schrenzel, Jacques; Stephan, Roger
2019
Symposium report: One Health meets sequencing
Microbes and Infection
4607823 Fauver, Joseph R.; Petrone, Mary E.; Hodcroft, Emma B.; Shioda, Kayoko; Ehrlich, Hanna Y.; Watts, Alexander G.; Vogels, Chantal B. F.; Brito, Anderson F.; Alpert, Tara; Muyombwe, Anthony; Razeq, Jafar; Downing, Randy; Cheemarla, Nagarjuna R.; Wyllie, Anne L.; Kalinich, Chaney C.; Ott, Isabel M.; Quick, Joshua; Loman, Nicholas J.; Neugebauer, Karla M.; Greninger, Alexander L.; Jerome, Keith R.; Roychoudhury, Pavitra; Xie, Hong; Shrestha, Lasata; Huang, Meei-Li; Pitzer, Virginia E.; Iwasaki, Akiko; Omer, Saad B.; Khan, Kamran; Bogoch, Isaac I.; Martinello, Richard A.; Foxman, Ellen F.; Landry, Marie L.; Neher, Richard A.; Ko, Albert I.; Grubaugh, Nathan D.
2020
Coast-to-Coast Spread of SARS-CoV-2 during the Early Epidemic in the United States
Cell
3729168 Ganusov, Vitaly V.; Neher, Richard A.; Perelson, Alan S.
2013
Mathematical modeling of escape of HIV from cytotoxic T lymphocyte responses
International Journal of Statistical Mechanics
Showing records 1 - 20 (of 87)
