Publications
Showing records 1 - 20 (of 110)
Publication: Book Item (Buchkap., Lexikonartikel, jur. Kommentierung, Beiträge in Sammelbänden etc.)
ID
Author
Year
Title
Publisher
2836805 Jug, Florian; Pietzsch, Tobias; Kainmüller, Dagmar; Funke, Jan; Kaiser, Matthias; van Nimwegen, Erik; Rother, Carsten; Myers, Gene
2014
Optimal joint segmentation and tracking of Escherichia coli in the mother machine
Springer
4619557 van Nimwegen, Erik
2006
Scaling laws in the functional content of genomes: Fundamental constants of evolution?
Springer
Publication: JournalArticle (Originalarbeit in einer wissenschaftlichen Zeitschrift)
ID
Author
Year
Title
Publisher
4662521 de Groot, Daan H.; Tjalma, Age J.; Bruggeman, Frank J.; van Nimwegen, Erik
2023
Effective bet-hedging through growth rate dependent stability
Proceedings of the National Academy of Sciences of the United States of America
4665125 Katsantoni, Maria; van Nimwegen, Erik; Zavolan, Mihaela
2023
Improved analysis of (e)CLIP data with RCRUNCH yields a compendium of RNA-binding protein binding sites and motifs
Genome Biology
4652863 Mukhtar, Tanzila; Breda, Jeremie; Adam, Manal A.; Boareto, Marcelo; Grobecker, Pascal; Karimaddini, Zahra; Grison, Alice; Eschbach, Katja; Chandrasekhar, Ramakrishnan; Vermeul, Swen; Okoniewski, Michal; Pachkov, Mikhail; Harwell, Corey C.; Atanasoski, Suzana; Beisel, Christian; Iber, Dagmar; van Nimwegen, Erik; Taylor, Verdon
2022
Temporal and sequential transcriptional dynamics define lineage shifts in corticogenesis
The EMBO Journal
4647756 Baranasic, Damir; Hörtenhuber, Matthias; Balwierz, Piotr J.; Zehnder, Tobias; Mukarram, Abdul Kadir; Nepal, Chirag; Várnai, Csilla; Hadzhiev, Yavor; Jimenez-Gonzalez, Ada; Li, Nan; Wragg, Joseph; D'Orazio, Fabio M.; Relic, Dorde; Pachkov, Mikhail; Díaz, Noelia; Hernández-Rodríguez, Benjamín; Chen, Zelin; Stoiber, Marcus; Dong, Michaël; Stevens, Irene; Ross, Samuel E.; Eagle, Anne; Martin, Ryan; Obasaju, Oluwapelumi; Rastegar, Sepand; McGarvey, Alison C.; Kopp, Wolfgang; Chambers, Emily; Wang, Dennis; Kim, Hyejeong R.; Acemel, Rafael D.; Naranjo, Silvia; Łapiński, Maciej; Chong, Vanessa; Mathavan, Sinnakaruppan; Peers, Bernard; Sauka-Spengler, Tatjana; Vingron, Martin; Carninci, Piero; Ohler, Uwe; Lacadie, Scott Allen; Burgess, Shawn M.; Winata, Cecilia; van Eeden, Freek; Vaquerizas, Juan M.; Gómez-Skarmeta, José Luis; Onichtchouk, Daria; Brown, Ben James; Bogdanovic, Ozren; van Nimwegen, Erik; Westerfield, Monte; Wardle, Fiona C.; Daub, Carsten O.; Lenhard, Boris; Müller, Ferenc
2022
Multiomic atlas with functional stratification and developmental dynamics of zebrafish cis-regulatory elements
Nature Genetics
4639778 Urchueguía, Arantxa; Galbusera, Luca; Chauvin, Dany; Bellement, Gwendoline; Julou, Thomas; van Nimwegen, Erik
2021
Genome-wide gene expression noise in Escherichia coli is condition-dependent and determined by propagation of noise through the regulatory network
PLoS Biology
4613847 Sakoparnig, Thomas; Field, Chris; van Nimwegen, Erik
2021
Whole genome phylogenies reflect the distributions of recombination rates for many bacterial species
eLife
4619194 Breda, Jérémie; Zavolan, Mihaela; van Nimwegen, Erik
2021
Bayesian inference of gene expression states from single-cell RNA-seq data
Nature Biotechnology
4620840 Grapotte, Mathys; Saraswat, Manu; Bessière, Chloé; Menichelli, Christophe; Ramilowski, Jordan A.; Severin, Jessica; Hayashizaki, Yoshihide; Itoh, Masayoshi; Tagami, Michihira; Murata, Mitsuyoshi; Kojima-Ishiyama, Miki; Noma, Shohei; Noguchi, Shuhei; Kasukawa, Takeya; Hasegawa, Akira; Suzuki, Harukazu; Nishiyori-Sueki, Hiromi; Frith, Martin C.; Fantom consortium,; Chatelain, Clément; Carninci, Piero; de Hoon, Michiel J. L.; Wasserman, Wyeth W.; Bréhélin, Laurent; Lecellier, Charles-Henri
2021
Discovery of widespread transcription initiation at microsatellites predictable by sequence-based deep neural network
Nature Communications
4605284 Galbusera, Luca; Bellement-Theroue, Gwendoline; Urchueguia, Arantxa; Julou, Thomas; van Nimwegen, Erik
2020
Using fluorescence flow cytometry data for single-cell gene expression analysis in bacteria
PLoS ONE
4596343 Mukhtar, Tanzila; Breda, Jeremie; Grison, Alice; Karimaddini, Zahra; Grobecker, Pascal; Iber, Dagmar; Beisel, Christian; van Nimwegen, Erik; Taylor, Verdon
2020
Tead transcription factors differentially regulate cortical development
Scientific Reports
4610473 Julou, Thomas; Zweifel, Ludovit; Blank, Diana; Fiori, Athos; van Nimwegen, Erik
2020
Subpopulations of sensorless bacteria drive fitness in fluctuating environments
PLoS biology
4509680 Berger, Severin; Pachkov, Mikhail; Arnold, Phil; Omidi, Saeed; Kelley, Nicholas; Salatino, Silvia; van Nimwegen, Erik
2019
Crunch: integrated processing and modeling of ChIP-seq data in terms of regulatory motifs
Genome Research
4523667 Witz, Guillaume; van Nimwegen, Erik; Julou, Thomas
2019
Initiation of chromosome replication controls both division and replication cycles in; E. coli; through a double-adder mechanism
eLife
4462735 Gruber, Andreas J.; Schmidt, Ralf; Ghosh, Souvik; Martin, Georges; Gruber, Andreas R.; van Nimwegen, Erik; Zavolan, Mihaela
2018
Discovery of physiological and cancer-related regulators of 3' UTR processing with KAPAC
Genome biology
4234977 Kaiser, Matthias; Jug, Florian; Julou, Thomas; Deshpande, Siddharth; Pfohl, Thomas; Silander, Olin K.; Myers, Gene; van Nimwegen, Erik
2018
Monitoring single-cell gene regulation under dynamically controllable conditions with integrated microfluidics and software
Nature Communications
4487357 Rzepiela, Andrzej J.; Ghosh, Souvik; Breda, Jeremie; Vina-Vilaseca, Arnau; Syed, Afzal P.; Gruber, Andreas J.; Eschbach, Katja; Beisel, Christian; van Nimwegen, Erik; Zavolan, Mihaela
2018
Single-cell mRNA profiling reveals the hierarchical response of miRNA targets to miRNA induction
Molecular systems biology
3931575 Omidi, Saeed; Zavolan, Mihaela; Pachkov, Mikhail; Breda, Jeremie; Berger, Severin; van Nimwegen, Erik
2017
Automated incorporation of pairwise dependency in transcription factor binding site prediction using dinucleotide weight tensors
PLoS Computational Biology
3589717 van Nimwegen, Erik
2016
Inferring Contacting Residues within and between Proteins: What Do the Probabilities Mean?
PLoS Computational Biology
Showing records 1 - 20 (of 110)
