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Nucleotide-driven conformational changes in the reverse gyrase helicase-like domain couple the nucleotide cycle to DNA processing
JournalArticle (Originalarbeit in einer wissenschaftlichen Zeitschrift)
 
ID 749160
Author(s) Del Toro Duany, Y.; Klostermeier, Dagmar
Author(s) at UniBasel Klostermeier, Dagmar
Year 2011
Title Nucleotide-driven conformational changes in the reverse gyrase helicase-like domain couple the nucleotide cycle to DNA processing
Journal Physical Chemistry, Chemical Physics
Volume 13
Number 21
Pages / Article-Number 10009-10019
Abstract

Reverse gyrase introduces positive supercoils into DNA in an ATP-dependent process. It has a modular structure comprising a helicase-like and a topoisomerase domain. The helicase-like domain consists of two RecA-like subdomains and thus structurally resembles members of the helicase superfamily 2. It is a nucleotide-dependent switch that alters between an ATP state with a slight preference for dsDNA, and an ADP state with a high preference for ssDNA. Inter-domain communication between the helicase-like and the topoisomerase domain is central for their functional cooperation in reverse gyrase. The latch, an insertion into the helicase-like domain, has been suggested as an important element in coordinating their activities. Here, we have dissected the nucleotide cycle of the reverse gyrase helicase-like domain in the absence and presence of different DNA substrates. With this comprehensive thermodynamic characterization of the nucleotide cycle of the helicase-like domain, in combination with single molecule FRET data on the conformation of the helicase-like domain at all stages of the catalytic cycle, a picture emerges as to how the helicase-like domain may guide ATP-dependent positive supercoiling by reverse gyrase.

Publisher Royal Society of Chemistry
ISSN/ISBN 1463-9076
edoc-URL http://edoc.unibas.ch/dok/A5844163
Full Text on edoc No
Digital Object Identifier DOI 10.1039/C0CP02859B
PubMed ID http://www.ncbi.nlm.nih.gov/pubmed/21350762
ISI-Number WOS:000290732000012
Document type (ISI) article
 
   

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