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InfectX: Systems Biology of pathogen entry in human cells
Third-party funded project |
Project title |
InfectX: Systems Biology of pathogen entry in human cells |
Principal Investigator(s) |
Dehio, Christoph
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Co-Investigator(s) |
Arrieumerlou, Cécile Beerenwinkel, Niko Greber, Urs Hardt, Wolf-Dietrich Helenius, Ari Iber, Dagmar von Mering, Christian Wollscheid, Bernd Stahlberg, Henning Pelkmans, Lucas
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Organisation / Research unit |
Departement Biozentrum / Molecular Microbiology (Dehio) |
Project Website |
http://www.infectx.ch |
Project start |
01.01.2010 |
Probable end |
31.12.2013 |
Status |
Completed |
Abstract |
A new line of attack against bacterial and viral infections consists of designing drugs against host proteins that are essential for infection. In order to colonize cells, pathogens subvert the functions of a limited number of host cell receptors, signaling proteins and molecular machines described as the infectome. The aim of the “InfectX” RTD project is to comprehensively identify the components of the human infectome for a set of important bacterial and viral pathogens and to develop new mathematical and computational methods with predictive power to reconstruct key signaling pathways controlling pathogen entry into human cells. The components of the infectome will be identified by combining high-content microscopy-based, genome-wide RNA interference (RNAi) screens with surface and phosphoproteome datasets. Functional and molecular characterization of key signaling components will occur by iterative loops between secondary RNAi screens, biochemistry, multi-dimensional fluorescence microscopy and computational-based pathway reconstruction methods. The refined models will then be used to predict human targets suitable for the development of novel anti-infectives that interfere with pathogen infection in human cells. |
Keywords |
Systems biology, Bacterial Entry, Viral Entry, Proteomics, Modeling |
Financed by |
Swiss Government (Research Cooperations)
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Published results () |
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ID |
Autor(en) |
Titel |
ISSN / ISBN |
Erschienen in |
Art der Publikation |
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3135620 |
Rämö, Pauli; Drewek, Anna; Arrieumerlou, Cécile; Beerenwinkel, Niko; Ben-Tekaya, Houchaïma; Cardel, Bettina; Casanova, Alain; Conde-Alvarez, Raquel; Cossart, Pascale; Csúcs, Gábor; Eicher, Simone; Emmenlauer, Mario; Greber, Urs; Hardt, Wolf-Dietrich; Helenius, Ari; Kasper, Christoph; Kaufmann, Andreas; Kreibich, Saskia; Kühbacher, Andreas; Kunszt, Peter; Low, Shyan Huey; Mercer, Jason; Mudrak, Daria; Muntwiler, Simone; Pelkmans, Lucas; Pizarro-Cerdá, Javier; Podvinec, Michael; Pujadas, Eva; Rinn, Bernd; Rouilly, Vincent; Schmich, Fabian; Siebourg-Polster, Juliane; Snijder, Berend; Stebler, Michael; Studer, Gabriel; Szczurek, Ewa; Truttmann, Matthias; von Mering, Christian; Vonderheit, Andreas; Yakimovich, Artur; Bühlmann, Peter; Dehio, Christoph |
Simultaneous analysis of large-scale RNAi screens for pathogen entry |
1471-2164 |
BMC Genomics |
Publication: JournalArticle (Originalarbeit in einer wissenschaftlichen Zeitschrift) |
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3135627 |
Truttmann, MC; Misselwitz, B; Huser, S; Hardt, W-D; Critchley, DR; Dehio, C |
Bartonella henselae engages inside-out and outside-in signaling by integrin β1 and talin1 during invasome-mediated bacterial uptake. |
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J. Cell. Sci |
Publication: JournalArticle (Originalarbeit in einer wissenschaftlichen Zeitschrift) |
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3135630 |
Kühbacher, Andreas; Emmenlauer, Mario; Rämö, Pauli; Kafai, Natasha; Dehio, Christoph; Cossart, Pascale; Pizarro-Cerdá, Javier |
Genome-Wide siRNA Screen Identifies Complementary Signaling Pathways Involved in Listeria Infection and Reveals Different Actin Nucleation Mechanisms during Listeria Cell Invasion and Actin Comet Tail Formation |
2150-7511 |
mBio |
Publication: JournalArticle (Originalarbeit in einer wissenschaftlichen Zeitschrift) |
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3135639 |
Siebourg-Polster, Juliane; Mudrak, Daria; Emmenlauer, Mario; Rämö, Pauli; Dehio, Christoph; Greber, Urs; Fröhlich, Holger; Beerenwinkel, Niko |
NEMix: single-cell nested effects models for probabilistic pathway stimulation |
1553-734X ; 1553-7358 |
PLoS Computational Biology |
Publication: JournalArticle (Originalarbeit in einer wissenschaftlichen Zeitschrift) |
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3136020 |
Stekhoven, Daniel J.; Omasits, Ulrich; Quebatte, Maxime; Dehio, Christoph; Ahrens, Christian H. |
Proteome-wide identification of predominant subcellular protein localizations in a bacterial model organism |
1874-3919 ; 1876-7737 |
Journal of Proteomics |
Publication: JournalArticle (Originalarbeit in einer wissenschaftlichen Zeitschrift) |
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3136025 |
Farhan, M; Ruusuvuori, P; Emmenlauer, M; Rämö, P; Dehio, C; Yli-Harja, O |
Multi-scale Gaussian representation and outline-learning based cell image segmentation |
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BMC Bioinformatics |
Publication: JournalArticle (Originalarbeit in einer wissenschaftlichen Zeitschrift) |
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3136028 |
Lu, YY; Franz, B; Truttmann, MC; Riess, T; Gay-Fraret, J; Faustmann, M; Kempf, VA; Dehio, C |
Bartonella henselae trimeric autotransporter adhesin BadA expression interferes with effector translocation by the VirB/D4 type IV secretion system |
1462-5814 |
Cellular microbiology |
Publication: JournalArticle (Originalarbeit in einer wissenschaftlichen Zeitschrift) |
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3136042 |
Eicher, SC; Dehio, C |
Bartonella entry mechanisms into mammalian host cells |
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Cellular Microbiology |
Publication: JournalArticle (Originalarbeit in einer wissenschaftlichen Zeitschrift) |
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3136043 |
Truttmann, MC; Guye, P; Dehio, C |
BID-F1 and BID-F2 domains of Bartonella henselae effector protein BepF trigger together with BepC the formation of invasome structures |
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PLoS One |
Publication: JournalArticle (Originalarbeit in einer wissenschaftlichen Zeitschrift) |
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3136054 |
Kühbacher, Andreas; Gouin, Edith; Mercer, Jason; Emmenlauer, Mario; Dehio, Christoph; Cossart, Pascale; Pizarro-Cerdá, Javier |
Imaging InlC secretion to investigate cellular infection by the bacterial pathogen Listeria monocytogenes |
1940-087X |
Journal of Visualized Experiments |
Publication: JournalArticle (Originalarbeit in einer wissenschaftlichen Zeitschrift) |
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