Data Entry: Please note that the research database will be replaced by UNIverse by the end of October 2023. Please enter your data into the system https://universe-intern.unibas.ch. Thanks

Login for users with Unibas email account...

Login for registered users without Unibas email account...

 
Bacterial stationary phase: interlacing of variability and active responses
Third-party funded project
Project title Bacterial stationary phase: interlacing of variability and active responses
Principal Investigator(s) Kavcic, Bor
van Nimwegen, Erik
Co-Investigator(s) Julou, Thomas
Organisation / Research unit Departement Biozentrum / Bioinformatics (van Nimwegen)
Department Departement Biozentrum / Bioinformatics (van Nimwegen)
Project start 01.05.2023
Probable end 01.05.2025
Status Active
Abstract

An organism’s evolutionary viability depends on its ability to respond to various environmental challenges. These challenges can range from highly complex ecological rearrangements to seemingly simple changes such as the lack of a particular nutrient. Even for these “simpler” changes, the responses of an organism often involve profound physiological reorganization. In bacteria, for instance, shifting from a nutrient-rich to a nutrient-deprived environment causes dramatic changes in their physiology. In such a shift, machinery that supports exponential growth becomes poorly suited for survival in a non-growing state. Thus, bacteria must reshape their proteome, condense their DNA, etc., to better cope with the new environment. These responses are inherently variable yet reflective of bacterial regulatory programs shaped by evolution. Variability underlies bet-hedging strategies, but it is unclear how it arises and determines the survival of bacteria in a stationary phase. During my postdoc in the van Nimwegen group, I aim to identify quantitative rules governing physiological rearrangements and gene expression variability at the entry into the stationary phase. By combining experimental and modeling work, I will investigate the relative contribution of both passive processes (e.g., exhaustion of intracellular resources) and active regulatory responses (e.g., targeted protein degradation, up- and down-regulation of gene expression) during the transition into the stationary phase. Besides ecology and evolution, the physiology of bacteria in the stationary phase shapes bacterial responses to antibiotics, which makes understanding the mechanisms of growth arrest clinically relevant as well.

Keywords bacteria, stationary phase, gene expression
Financed by Foundations and Associations
   

MCSS v5.8 PRO. 0.448 sec, queries - 0.000 sec ©Universität Basel  |  Impressum   |    
11/05/2024