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CAMEO and CASP: Assessment of Protein Structure Modelling and Prediction Techniques
Project funded by own resources |
Project title |
CAMEO and CASP: Assessment of Protein Structure Modelling and Prediction Techniques |
Principal Investigator(s) |
Schwede, Torsten
|
Project Members |
Barbato, Alessandro Roth, Steven Haas, Jürgen Behringer, Dario Gumienny, Rafal Wojciech
|
Organisation / Research unit |
Departement Biozentrum / Bioinformatics (Schwede) |
Project Website |
http://cameo3d.org/ |
Project start |
01.01.2009 |
Probable end |
31.12.2015 |
Status |
Completed |
Abstract |
The goal of CASP, the Community Wide Experiment on the Critical Assessment of Techniques for Protein Structure Prediction, is to obtain an in-depth and objective assessment of our current abilities and inabilities in the area of protein structure prediction. To this end, participants have predicted as much as possible about a set of soon to be known structures. These true predictions, not ‘post-dictions’ made on already known structure, were assessed to explore if the models produced were similar to the corresponding experimental structure, and which methods are most effective. CAMEO uses weekly pre-released sequences from PDB for the continuous automated blind evaluation of structure prediction methods. This allows methods developers to continuously benchmark and improve methods, and users of models to select the most appropriate techniques.
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Financed by |
University funds Other funds
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Published results () |
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ID |
Autor(en) |
Titel |
ISSN / ISBN |
Erschienen in |
Art der Publikation |
|
156362 |
Clarke, Neil D; Ezkurdia, Iakes; Kopp, Jürgen; Read, Randy J; Schwede, Torsten; Tress, Michael |
Domain Definition and Target Classification for CASP7 |
0887-3585 |
Proteins |
Publication: JournalArticle (Originalarbeit in einer wissenschaftlichen Zeitschrift) |
|
156364 |
Battey, James N D; Kopp, Jürgen; Bordoli, Lorenza; Read, Randy J; Clarke, Neil D; Schwede, Torsten |
Automated server predictions in CASP7 |
0887-3585 |
Proteins |
Publication: JournalArticle (Originalarbeit in einer wissenschaftlichen Zeitschrift) |
|
156365 |
Bordoli, Lorenza; Kiefer, Florian; Schwede, Torsten |
Assessment of disorder predictions in CASP7 |
0887-3585 |
Proteins |
Publication: JournalArticle (Originalarbeit in einer wissenschaftlichen Zeitschrift) |
|
156366 |
Kopp, Jürgen; Bordoli, Lorenza; Battey, James N D; Kiefer, Florian; Schwede, Torsten |
Assessment of CASP7 predictions for template-based modeling targets |
0887-3585 |
Proteins |
Publication: JournalArticle (Originalarbeit in einer wissenschaftlichen Zeitschrift) |
|
856155 |
Kryshtafovych, Andriy; Moult, John; Bartual, Sergio G.; Bazan, J. Fernando; Berman, Helen; Casteel, Darren E.; Christodoulou, Evangelos; Everett, John K.; Hausmann, Jens; Heidebrecht, Tatjana; Hills, Tanya; Hui, Raymond; Hunt, John F.; Seetharaman, Jayaraman; Joachimiak, Andrzej; Kennedy, Michael A.; Kim, Choel; Lingel, Andreas; Michalska, Karolina; Montelione, Gaetano T.; Otero, José M.; Perrakis, Anastassis; Pizarro, Juan C.; van Raaij, Mark J.; Ramelot, Theresa A.; Rousseau, Francois; Tong, Liang; Wernimont, Amy K.; Young, Jasmine; Schwede, Torsten |
Target highlights in CASP9: Experimental target structures for the critical assessment of techniques for protein structure prediction |
0887-3585 ; 1097-0134 |
Proteins: Structure, Function, and Bioinformatics |
Publication: JournalArticle (Originalarbeit in einer wissenschaftlichen Zeitschrift) |
|
856156 |
Mariani, Valerio; Kiefer, Florian; Schmidt, Tobias; Haas, Juergen; Schwede, Torsten |
Assessment of template based protein structure predictions in CASP9 |
0887-3585 |
Proteins |
Publication: JournalArticle (Originalarbeit in einer wissenschaftlichen Zeitschrift) |
|
856157 |
Kinch, Lisa N.; Shi, Shuoyong; Cheng, Hua; Cong, Qian; Pei, Jimin; Mariani, Valerio; Schwede, Torsten; Grishin, Nick V. |
CASP9 target classification |
0887-3585 |
Proteins |
Publication: JournalArticle (Originalarbeit in einer wissenschaftlichen Zeitschrift) |
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856158 |
Schmidt, Tobias; Haas, Jürgen; Gallo Cassarino, Tiziano; Schwede, Torsten |
Assessment of ligand-binding residue predictions in CASP9 |
0887-3585 |
Proteins |
Publication: JournalArticle (Originalarbeit in einer wissenschaftlichen Zeitschrift) |
|
2158295 |
Mariani, Valerio; Biasini, Marco; Barbato, Alessandro; Schwede, Torsten |
lDDT: a local superposition-free score for comparing protein structures and models using distance difference tests |
1367-4803 |
Bioinformatics |
Publication: JournalArticle (Originalarbeit in einer wissenschaftlichen Zeitschrift) |
|
2158297 |
Kryshtafovych, Andriy; Barbato, Alessandro; Fidelis, Krzysztof; Monastyrskyy, Bohdan; Schwede, Torsten; Tramontano, Anna |
Assessment of the assessment : evaluation of the model quality estimates in CASP10 |
0887-3585 |
Proteins |
Publication: JournalArticle (Originalarbeit in einer wissenschaftlichen Zeitschrift) |
|
2288380 |
Kryshtafovych, Andriy; Moult, John; Bales, Patrick; Bazan, J. Fernando; Biasini, Marco; Burgin, Alex; Chen, Chen; Cochran, Frank V.; Craig, Timothy K.; Das, Rhiju; Fass, Deborah; Garcia-Doval, Carmela; Herzberg, Osnat; Lorimer, Donald; Luecke, Hartmut; Ma, Xiaolei; Nelson, Daniel C.; van Raaij, Mark J.; Rohwer, Forest; Segall, Anca; Seguritan, Victor; Zeth, Kornelius; Schwede, Torsten |
Challenging the state-of-the-art in protein structure prediction : highlights of experimental target structures for the 10(th) Critical Assessment of Techniques for Protein Structure Prediction Experiment CASP10 |
0887-3585 |
Proteins |
Publication: JournalArticle (Originalarbeit in einer wissenschaftlichen Zeitschrift) |
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2293714 |
Moult, John; Fidelis, Krzysztof; Kryshtafovych, Andriy; Schwede, Torsten; Tramontano, Anna |
Critical assessment of methods of protein structure prediction (CASP) - round X |
0887-3585 |
Proteins |
Publication: JournalArticle (Originalarbeit in einer wissenschaftlichen Zeitschrift) |
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2293716 |
Gallo Cassarino, Tiziano; Bordoli, Lorenza; Schwede, Torsten |
Assessment of ligand binding site predictions in CASP10. |
0887-3585 |
Proteins |
Publication: JournalArticle (Originalarbeit in einer wissenschaftlichen Zeitschrift) |
|
48220 |
Clarke, Neil D.; Ezkurdia, Iakes; Kopp, Jurgen; Read, Randy J.; Schwede, Torsten; Tress, Michael |
Domain definition and target classification for CASP7 |
0887-3585 |
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS |
Publication: JournalArticle (Originalarbeit in einer wissenschaftlichen Zeitschrift) |
|
48221 |
Kopp, Jurgen; Bordoli, Lorenza; Battey, James N. D.; Kiefer, Florian; Schwede, Torsten |
Assessment of CASP7 predictions for template-based modeling targets |
0887-3585 |
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS |
Publication: JournalArticle (Originalarbeit in einer wissenschaftlichen Zeitschrift) |
|
48222 |
Battey, James N. D.; Kopp, Jurgen; Bordoli, Lorenza; Read, Randy J.; Clarke, Neil D.; Schwede, Torsten |
Automated server predictions in CASP7 |
0887-3585 |
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS |
Publication: JournalArticle (Originalarbeit in einer wissenschaftlichen Zeitschrift) |
|
48223 |
Bordoli, Lorenza; Kiefer, Florian; Schwede, Torsten |
Assessment of disorder predictions in CASP7 |
0887-3585 |
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS |
Publication: JournalArticle (Originalarbeit in einer wissenschaftlichen Zeitschrift) |
|
156351 |
Benkert, Pascal; Tosatto, Silvio C E; Schwede, Torsten |
Global and local model quality estimation at CASP8 using the scoring functions QMEAN and QMEANclust |
0887-3585 |
Proteins |
Publication: JournalArticle (Originalarbeit in einer wissenschaftlichen Zeitschrift) |
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3631638 |
Kryshtafovych, Andriy; Moult, John; Baslé, Arnaud; Burgin, Alex; Craig, Timothy K.; Edwards, Robert A.; Fass, Deborah; Hartmann, Marcus D.; Korycinski, Mateusz; Lewis, Richard J.; Lorimer, Donald; Lupas, Andrei N.; Newman, Janet; Peat, Thomas S.; Piepenbrink, Kurt H.; Prahlad, Janani; van Raaij, Mark J.; Rohwer, Forest; Segall, Anca M.; Seguritan, Victor; Sundberg, Eric J.; Singh, Abhimanyu K.; Wilson, Mark A.; Schwede, Torsten |
Some of the most interesting CASP11 targets through the eyes of their authors |
0887-3585 ; 1097-0134 |
Proteins: Structure, Function, and Bioinformatics |
Publication: JournalArticle (Originalarbeit in einer wissenschaftlichen Zeitschrift) |
|
3631667 |
Kryshtafovych, Andriy; Barbato, Alessandro; Monastyrskyy, Bohdan; Fidelis, Krzysztof; Schwede, Torsten; Tramontano, Anna |
Methods of model accuracy estimation can help selecting the best models from decoy sets: assessment of model accuracy estimations in CASP11 |
0887-3585 ; 1097-0134 |
Proteins: Structure, Function, and Bioinformatics |
Publication: JournalArticle (Originalarbeit in einer wissenschaftlichen Zeitschrift) |
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Cooperations () |
|
ID |
Kreditinhaber |
Kooperationspartner |
Institution |
Laufzeit - von |
Laufzeit - bis |
|
1533620 |
Schwede, Torsten |
Tramontano, Anna |
University of Rome |
01.01.2009 |
31.12.2016 |
|
1533624 |
Schwede, Torsten |
Moult, John |
IBBR, University of Maryland |
01.01.2009 |
31.12.2021 |
|
105119 |
Schwede, Torsten |
Berman, Helen |
RCSB PDB, Nature PSI Structural Genomics Knowledgebase |
01.04.2007 |
31.12.2017 |
|
105129 |
Schwede, Torsten |
Westbrook, John D. |
RCSB PDB, Nature PSI Structural Genomics Knowledgebase |
01.04.2007 |
31.07.2016 |
|
2355645 |
Schwede, Torsten |
Fidelis, Krzysztof |
UC Davis Genome Center |
01.01.2009 |
31.12.2017 |
|
2355647 |
Schwede, Torsten |
Kryshtafovych, Andriy |
UC Davis Genome Center |
01.01.2009 |
31.12.2021 |
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