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Backbone hydration determines the folding signature of amino acid residues
JournalArticle (Originalarbeit in einer wissenschaftlichen Zeitschrift)
 
ID 3208099
Author(s) Bignucolo, Olivier; Leung, Hoi Tik Alvin; Grzesiek, Stephan; Bernèche, Simon
Author(s) at UniBasel Bernèche, Simon
Bignucolo, Olivier
Leung, Hoi Tik Alvin
Grzesiek, Stephan
Year 2015
Title Backbone hydration determines the folding signature of amino acid residues
Journal Journal of the American Chemical Society
Volume 137
Number 13
Pages / Article-Number 4300-3
Abstract

The relation between the sequence of a protein and its three-dimensional structure remains largely unknown. A lasting dream is to elucidate the side-chain-dependent driving forces that govern the folding process. Different structural data suggest that aromatic amino acids play a particular role in the stabilization of protein structures. To better understand the underlying mechanism, we studied peptides of the sequence EGAAXAASS (X = Gly, Ile, Tyr, Trp) through comparison of molecular dynamics (MD) trajectories and NMR residual dipolar coupling (RDC) measurements. The RDC data for aromatic substitutions provide evidence for a kink in the peptide backbone. Analysis of the MD simulations shows that the formation of internal hydrogen bonds underlying a helical turn is key to reproduce the experimental RDC values. The simulations further reveal that the driving force leading to such helical-turn conformations arises from the lack of hydration of the peptide chain on either side of the bulky aromatic side chain, which can potentially act as a nucleation point initiating the folding process.

Publisher American Chemical Society
ISSN/ISBN 0002-7863
edoc-URL http://edoc.unibas.ch/dok/A6428735
Full Text on edoc No
Digital Object Identifier DOI 10.1021/jacs.5b00660
PubMed ID http://www.ncbi.nlm.nih.gov/pubmed/25794270
ISI-Number WOS:000352752000007
Document type (ISI) Journal Article
 
   

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16/04/2024