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Cooperative target mRNA destabilization and translation inhibition by miR-58 microRNA family in C. elegans
JournalArticle (Originalarbeit in einer wissenschaftlichen Zeitschrift)
 
ID 3208068
Author(s) Subasic, Deni; Brümmer, Anneke; Wu, Yibo; Pinto, Sérgio Morgado; Imig, Jochen; Keller, Martin; Jovanovic, Marko; Lightfoot, Helen Louise; Nasso, Sara; Goetze, Sandra; Brunner, Erich; Hall, Jonathan; Aebersold, Ruedi; Zavolan, Mihaela; Hengartner, Michael O
Author(s) at UniBasel Zavolan, Mihaela
Brümmer, Anneke
Year 2015
Title Cooperative target mRNA destabilization and translation inhibition by miR-58 microRNA family in C. elegans
Journal Genome research
Volume 25
Number 11
Pages / Article-Number 1680-91
Abstract

In animals, microRNAs frequently form families with related sequences. The functional relevance of miRNA families and the relative contribution of family members to target repression have remained, however, largely unexplored. Here, we used the C. elegans miR-58 miRNA family, comprised primarily of the four highly abundant members miR-58, miR-80, miR-81 and miR-82, as a model to investigate the redundancy of miRNA family members and their impact on target expression in an in vivo setting. We found that miR-58 family members repress largely overlapping sets of targets in a predominantly additive fashion. Progressive deletions of miR-58 family members lead to cumulative upregulation of target protein and RNA levels. Phenotypic defects could only be observed in the family quadruple mutant, which also showed the strongest change in target protein levels. Interestingly, although the seed sequences of miR-80 and miR-58 differ in one nucleotide, predicted canonical miR-80 targets were efficiently upregulated in the mir-58 single mutant, indicating functional redundancy of distinct members of this miRNA family. At the aggregate level, target binding leads mainly to mRNA degradation, although we also observed some degree of translational inhibition, particularly in the single miR-58 family mutants. These results provide a framework for understanding how miRNA family members interact to regulate target mRNAs.

Publisher Cold Spring Harbor Laboratory Press
ISSN/ISBN 1088-9051
edoc-URL http://edoc.unibas.ch/39444/
Full Text on edoc No
Digital Object Identifier DOI 10.1101/gr.183160.114
PubMed ID http://www.ncbi.nlm.nih.gov/pubmed/26232411
ISI-Number WOS:000364355600009
Document type (ISI) Journal Article
 
   

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