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NCCR RNA & Disease (phase II)
Third-party funded project |
Project title |
NCCR RNA & Disease (phase II) |
Principal Investigator(s) |
Zavolan, Mihaela
|
Project Members |
Azevedo Salgado Guimaraes, Joao Carlos Dimitriades, Beatrice Schmidt, Ralf Mittal, Nitish Gypas, Foivos Ghosh, Shreemoyee Kanitz, Alexander Mues, Lea
|
Organisation / Research unit |
Departement Biozentrum / Bioinformatics (Zavolan) |
Department |
Departement Biozentrum / Bioinformatics (Zavolan) |
Project Website |
https://nccr-rna-and-disease.ch/ |
Project start |
01.05.2018 |
Probable end |
30.04.2022 |
Status |
Completed |
Abstract |
In the large collaborative project NCCR RNA&Disease, funded by SNF, we have two main sub-projects. In the first project we explore the function of an isoform of Argonaute 1 protein, which is generated by translation readthough, beyond the canonical stop codon. This isoform is extremely conserved in evolution, and we have indications that it carries out an entirely distinct function relative to other human mammalian Argonautes, promoting proliferation of cancer cells. The second sub-project follows our computational inference that a particular RNA binding protein, the polypyrimidine tract binding protein 1, affects the processing of RNAs in a particular cancer, glioblastoma. In this project we aim to characterize the mechanism and targets of this protein, as well as the contribution of specific targets in glioblastoma development. |
Keywords |
molecular life science, RNA processing, RNA metabolism, noncoding RNA, disease mechanism, translation, ribosome, RNA interference, miRNA, gene regulation, mRNA, tRNA, rRNA, lncRNA, nucleic acid |
Financed by |
Swiss National Science Foundation (SNSF) University of Basel
|
Follow-up project of |
2750044 NCCR RNA & Disease
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Published results () |
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ID |
Autor(en) |
Titel |
ISSN / ISBN |
Erschienen in |
Art der Publikation |
|
3975704 |
Martin, Georges; Schmidt, Ralf; Gruber, Andreas J.; Ghosh, Souvik; Keller, Walter; Zavolan, Mihaela |
3' End Sequencing Library Preparation with A-seq2 |
1940-087X |
Journal of Visualized Experiments |
Publication: JournalArticle (Originalarbeit in einer wissenschaftlichen Zeitschrift) |
|
3567622 |
Gruber, Andreas J.; Schmidt, Ralf; Gruber, Andreas R.; Martin, Georges; Ghosh, Souvik; Belmadani, Manuel; Keller, Walter; Zavolan, Mihaela |
A comprehensive analysis of 3' end sequencing data sets reveals novel polyadenylation signals and the repressive role of heterogeneous ribonucleoprotein C on cleavage and polyadenylation |
1088-9051 ; 1549-5469 |
Genome Research |
Publication: JournalArticle (Originalarbeit in einer wissenschaftlichen Zeitschrift) |
|
3892473 |
Mittal, Nitish; Guimaraes, Joao C.; Gross, Thomas; Schmidt, Alexander; Vina-Vilaseca, Arnau; Nedialkova, Danny D.; Aeschimann, Florian; Leidel, Sebastian A.; Spang, Anne; Zavolan, Mihaela |
The Gcn4 transcription factor reduces protein synthesis capacity and extends yeast lifespan |
2041-1723 |
Nature Communications |
Publication: JournalArticle (Originalarbeit in einer wissenschaftlichen Zeitschrift) |
|
4462735 |
Gruber, Andreas J.; Schmidt, Ralf; Ghosh, Souvik; Martin, Georges; Gruber, Andreas R.; van Nimwegen, Erik; Zavolan, Mihaela |
Discovery of physiological and cancer-related regulators of 3' UTR processing with KAPAC |
1474-760X |
Genome biology |
Publication: JournalArticle (Originalarbeit in einer wissenschaftlichen Zeitschrift) |
|
4487372 |
Gruber, Andreas J.; Gypas, Foivos; Riba, Andrea; Schmidt, Ralf; Zavolan, Mihaela |
Terminal exon characterization with TECtool reveals an abundance of cell-specific isoforms |
1548-7105 |
Nature methods |
Publication: JournalArticle (Originalarbeit in einer wissenschaftlichen Zeitschrift) |
|
4515423 |
Herrmann, Christina J.; Schmidt, Ralf; Kanitz, Alexander; Artimo, Panu; Gruber, Andreas J.; Zavolan, Mihaela |
PolyASite 2.0: a consolidated atlas of polyadenylation sites from 3' end sequencing |
0305-1048 ; 1362-4962 |
Nucleic acids research |
Publication: JournalArticle (Originalarbeit in einer wissenschaftlichen Zeitschrift) |
|
4525817 |
Liko, Dritan; Rzepiela, Andrzej; Vukojevic, Vanja; Zavolan, Mihaela; Hall, Michael N. |
Loss of TSC complex enhances gluconeogenesis via upregulation of Dlk1-Dio3 locus miRNAs |
0027-8424 ; 1091-6490 |
Proceedings of the National Academy of Sciences |
Publication: JournalArticle (Originalarbeit in einer wissenschaftlichen Zeitschrift) |
|
4596341 |
Guimaraes, Joao C.; Mittal, Nitish; Gnann, Alexandra; Jedlinski, Dominik; Riba, Andrea; Buczak, Katarzyna; Schmidt, Alexander; Zavolan, Mihaela |
A rare codon-based translational program of cell proliferation |
1474-7596 ; 1474-760X |
Genome Biology |
Publication: JournalArticle (Originalarbeit in einer wissenschaftlichen Zeitschrift) |
|
4603336 |
Ghosh, Souvik; Guimaraes, Joao C.; Lanzafame, Manuela; Schmidt, Alexander; Syed, Afzal Pasha; Dimitriades, Beatrice; Börsch, Anastasiya; Ghosh, Shreemoyee; Mittal, Nitish; Montavon, Thomas; Correia, Ana Luisa; Danner, Johannes; Meister, Gunter; Terracciano, Luigi M.; Pfeffer, Sébastien; Piscuoglio, Salvatore; Zavolan, Mihaela |
Prevention of dsRNA-induced interferon signaling by AGO1x is linked to breast cancer cell proliferation |
0261-4189 ; 1460-2075 |
The EMBO Journal |
Publication: JournalArticle (Originalarbeit in einer wissenschaftlichen Zeitschrift) |
|
4613851 |
Cléry, Antoine; Krepl, Miroslav; Nguyen, Cristina K. X.; Moursy, Ahmed; Jorjani, Hadi; Katsantoni, Maria; Okoniewski, Michal; Mittal, Nitish; Zavolan, Mihaela; Sponer, Jiri; Allain, Frédéric H.-T. |
Structure of SRSF1 RRM1 bound to RNA reveals an unexpected bimodal mode of interaction and explains its involvement in SMN1 exon7 splicing |
2041-1723 |
Nature Communications |
Publication: JournalArticle (Originalarbeit in einer wissenschaftlichen Zeitschrift) |
|
4619192 |
Ghosh, Souvik; Börsch, Anastasiya; Ghosh, Shreemoyee; Zavolan, Mihaela |
The transcriptional landscape of a hepatoma cell line grown on scaffolds of extracellular matrix proteins |
1471-2164 |
BMC Genomics |
Publication: JournalArticle (Originalarbeit in einer wissenschaftlichen Zeitschrift) |
|
4624863 |
Karousis, Evangelos D.; Gypas, Foivos; Zavolan, Mihaela; Mühlemann, Oliver |
Nanopore sequencing reveals endogenous NMD-targeted isoforms in human cells |
1474-7596 ; 1474-760X |
Genome Biology |
Publication: JournalArticle (Originalarbeit in einer wissenschaftlichen Zeitschrift) |
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Cooperations () |
|
ID |
Kreditinhaber |
Kooperationspartner |
Institution |
Laufzeit - von |
Laufzeit - bis |
|
2354689 |
Zavolan, Mihaela |
Hall, Jonathan |
ETH Zürich |
01.11.2009 |
31.12.2035 |
|
2834575 |
Zavolan, Mihaela |
Hall, Mike, Prof |
Biozentrum, University of Basel |
01.01.2010 |
31.12.2040 |
|
2834582 |
Zavolan, Mihaela |
Mühlemann, Oliver, Prof |
Department of Chemistry and Biochemistry, Universität Bern |
01.05.2014 |
30.12.2025 |
|
3721944 |
Zavolan, Mihaela |
Jeker, Lukas |
DBM, University Hospital Basel |
01.01.2015 |
31.12.2025 |
|
4613969 |
Zavolan, Mihaela |
Ruepp, Marc-David |
Kings College London |
01.05.2018 |
30.04.2022 |
|
2354647 |
Zavolan, Mihaela |
Allain, Frédéric |
ETH Zürich |
01.11.2011 |
30.04.2022 |
|
3721911 |
Zavolan, Mihaela |
Spang, Anne |
Biozentrum, University of Basel |
01.05.2014 |
31.12.2040 |
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