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Molecular Details of Outer Membrane Protein Biogenesis
Third-party funded project
Project title Molecular Details of Outer Membrane Protein Biogenesis
Principal Investigator(s) Hiller, Sebastian
Project Members Sborgi, Lorenzo
Carvalho Morgado, Maria Leonor
He, Lichun
Organisation / Research unit Departement Biozentrum / Structural Biology (Hiller)
Project start 01.08.2014
Probable end 31.07.2016
Status Completed
Abstract

Proteins in the outer membranes of Gram-negative bacteria and mitochondria are responsible for essential cellular functions, including transport, respiration, signal transduction, and catalysis. The outer membrane proteins (Omps) are synthesized in the cytosol of the cell and transported in an unfolded form to the respective target membrane. For the transport across the aqueous compartments along this pathway, the Omps are stabilized by chaperones. From these chaperone-bound states the proteins fold into the lipid bilayer, catalyzed by large β-barrel assembly machineries with central units from the Omp85 family of proteins. As a general goal of our work, we want to understand the molecular mechanisms underlying the Omp biogenesis at the atomic level. In the framework of the SNSF professorship prolongation, I want to focus on three particular aspects of this process, as defined below in projects A–C. Our main technique is nuclear magnetic resonance (NMR) spectroscopy, which we use together with complementary techniques to address our research questions. The development of improved NMR technology is thus an integral part of our activities. Such techniques are applicable to our membrane protein systems of interest but will also stimulate NMR research on other challenging biomacromolecular systems. Project A: Investigation of conformation and dynamics of SecB–Omp and trigger-factor–Omp complexes. We will establish biophysical descriptions of these two chaperones and of Omp substrates in complex with these chaperones by solution NMR spectroscopy. Preliminary data shows that we can handle the biochemistry of these systems well and can thus obtain high-quality NMR spectra. These studies will substantially contribute to understanding principles of chaperone function. Project B: Elucidation of the functional mechanism of the large β-barrel assembly machineries from the Omp85 proteins, Bam and Tam. We have previously determined the structure of the autotransporter translocase TamA and now we want to understand at the atomic level how folding and insertion of proteins into the membrane is accomplished. The mechanisms of Omp85 proteins are essential functions for Gram-negative bacteria and mitochondria. Project C: Biophysical studies to describe the in vitro folding mechanisms of β-barrel outer membrane folding and its modulation by external parameters. We have developed a setup for proton–deuterium exchange during Omp refolding and will use this setup to study the folding process at the atomic level. These research studies will contribute fundamental aspects the biophysics of membrane protein folding.

Keywords Membrane Proteins, Protein Structure Determination, Protein Function, Protein Folding, Nuclear Magnetic Resonance (NMR), Transport across Membranes, Membrane Protein Biogenesis, Protein Dynamics, Mitochondria, Outer Membrane, Protein Complexes, Chaperones
Financed by Swiss National Science Foundation (SNSF)
Follow-up project of 428100 Structure, Function and Folding of Membrane Proteins and their Complexes

Published results ()

  ID Autor(en) Titel ISSN / ISBN Erschienen in Art der Publikation
3511269  Raschle, Thomas; Rios Flores, Perla; Opitz, Christian; Müller, Daniel J.; Hiller, Sebastian  Monitoring Backbone Hydrogen-Bond Formation in β-Barrel Membrane Protein Folding  1521-3773  Angewandte Chemie. International edition in English  Publication: JournalArticle (Originalarbeit in einer wissenschaftlichen Zeitschrift) 
4066384  Holdbrook, Daniel A.; Burmann, Björn M.; Huber, Roland G.; Petoukhov, Maxim V.; Svergun, Dmitri I.; Hiller, Sebastian; Bond, Peter J.  A Spring-Loaded Mechanism Governs the Clamp-like Dynamics of the Skp Chaperone  0969-2126 ; 1878-4186  Structure  Publication: JournalArticle (Originalarbeit in einer wissenschaftlichen Zeitschrift) 
4066385  Thoma, Johannes; Ritzmann, Noah; Wolf, Dominik; Mulvihill, Estefania; Hiller, Sebastian; Müller, Daniel J.  Maltoporin LamB Unfolds β Hairpins along Mechanical Stress-Dependent Unfolding Pathways  0969-2126 ; 1878-4186  Structure  Publication: JournalArticle (Originalarbeit in einer wissenschaftlichen Zeitschrift) 
4066392  Hiller, Sebastian; Burmann, Björn M.  Chaperone-client complexes: A dynamic liaison  1090-7807 ; 1096-0856  Journal of Magnetic Resonance  Publication: JournalArticle (Originalarbeit in einer wissenschaftlichen Zeitschrift) 
2859572  Morgado, Leonor; Zeth, Kornelius; Burmann, Björn M.; Maier, Timm; Hiller, Sebastian  Characterization of the insertase BamA in three different membrane mimetics by solution NMR spectroscopy  0925-2738  Journal of biomolecular NMR  Publication: JournalArticle (Originalarbeit in einer wissenschaftlichen Zeitschrift) 
3135946  Maier, Timm; Clantin, Bernard; Gruss, Fabian; Dewitte, Frédérique; Delattre, Anne-Sophie; Jacob-Dubuisson, Françoise; Hiller, Sebastian; Villeret, Vincent  Conserved Omp85 lid-lock structure and substrate recognition in FhaC  2041-1723  Nature Communications  Publication: JournalArticle (Originalarbeit in einer wissenschaftlichen Zeitschrift) 
3210555  Thoma, Johannes; Burmann, Björn M.; Hiller, Sebastian; Müller, Daniel J.  Impact of holdase chaperones Skp and SurA on the folding of β-barrel outer-membrane proteins  1545-9993  Nature structural & molecular biology  Publication: JournalArticle (Originalarbeit in einer wissenschaftlichen Zeitschrift) 
3245159  Gruss, Fabian; Hiller, Sebastian; Maier, Timm  Purification and Bicelle Crystallization for Structure Determination of the E. coli Outer Membrane Protein TamA  1064-3745 ; 1940-6029  Methods in Molecular Biology  Publication: JournalArticle (Originalarbeit in einer wissenschaftlichen Zeitschrift) 
3395112  Burmann, Björn M.; Hiller, Sebastian  Chaperones and chaperone-substrate complexes: dynamic playgrounds for NMR spectroscopists  0079-6565  Progress in Nuclear Magnetic Resonance Spectroscopy  Publication: JournalArticle (Originalarbeit in einer wissenschaftlichen Zeitschrift) 
   

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