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RNATRAIN - The European non-coding RNA training network
Third-party funded project
Project title RNATRAIN - The European non-coding RNA training network
Principal Investigator(s) Zavolan, Mihaela
Project Members Gypas, Foivos
Organisation / Research unit Departement Biozentrum / Bioinformatics (Zavolan)
Project Website http://rnatrain.ku.dk/
Project start 01.10.2013
Probable end 30.09.2017
Status Completed
Abstract

A surprising outcome from the human genome sequencing project was that the number of protein coding genes only amounts to about 21.000 – a number not dramatically different from that found in much simpler eukaryotes. So what can explain and form the molecular basis for the significantly increased complexity
found, for instance, in mammals? Part of the answer resides in one of the most important and unexpected biological findings within the last decade; the realization that the vast majority of the mammalian genome is actively transcribed at some stage in development despite a lack of translation to protein. The regions encompassing protein coding potential (exons) in humans only amount to approximately 2% of the genome and this fraction has been the focus for the majority of scientific studies over the last many decades. New high-throughput methodologies, such as next generation sequencing (NGS) and tiling arrays have
demonstrated the existence of multiple new classes of non-coding RNA, such as microRNA (miRNA), long intergenic ncRNA (lincRNAs) and RNA molecules produced at promoter and enhancer regions, PROMPTs and eRNAs, respectively. Although our knowledge on the multitude of transcripts produced by the noncoding
98% of the genome is still very sketchy, pivotal roles have been established for ncRNAs in organismal development and homeostasis, in cellular proliferation, differentiation and apoptosis and in a broad range of human pathologies.

As the field is very new and holds the promise of major leaps in biological understanding and therapeutics development, it constitutes an important and very fertile breeding ground for a new generation of scientists.
Importantly, such leaps in understanding can only be brought about using a multidisciplinary and crosssectorial approach, in which techniques and knowhow from diverse fields like genetics, biochemistry, informatics and commercialization is combined and aligned. Accordingly, we here propose to form a pan-
European RNA training network, RNATRAIN. This network will be devoted to educating the next generation of European researchers focusing on the functions and importance of ncRNAs and applying their skills in multidisciplinary projects in which the ncRNAs are studied in the context of development, differentiation and disease.

Financed by Commission of the European Union

Published results ()

  ID Autor(en) Titel ISSN / ISBN Erschienen in Art der Publikation
3208069  Kanitz, Alexander; Gypas, Foivos; Gruber, Andreas J; Gruber, Andreas R; Martin, Georges; Zavolan, Mihaela  Comparative assessment of methods for the computational inference of transcript isoform abundance from RNA-seq data  1465-6906  Genome biology  Publication: JournalArticle (Originalarbeit in einer wissenschaftlichen Zeitschrift) 
3722307  Gumienny, Rafal; Jedlinski, Dominik J.; Schmidt, Alexander; Gypas, Foivos; Martin, Georges; Vina-Vilaseca, Arnau; Zavolan, Mihaela  High-throughput identification of C/D box snoRNA targets with CLIP and RiboMeth-seq  0301-5610 ; 1362-4962  Nucleic Acids Research  Publication: JournalArticle (Originalarbeit in einer wissenschaftlichen Zeitschrift) 
4487372  Gruber, Andreas J.; Gypas, Foivos; Riba, Andrea; Schmidt, Ralf; Zavolan, Mihaela  Terminal exon characterization with TECtool reveals an abundance of cell-specific isoforms  1548-7105  Nature methods  Publication: JournalArticle (Originalarbeit in einer wissenschaftlichen Zeitschrift) 
4613849  Ho-Xuan, Hung; Lehmann, Gerhard; Glazar, Petar; Gypas, Foivos; Eichner, Norbert; Heizler, Kevin; Schlitt, Hans Jürgen; Zavolan, Mihaela; Rajewsky, Nikolaus; Meister, Gunter; Hackl, Christina  Gene Expression Signatures of a Preclinical Mouse Model during Colorectal Cancer Progression under Low-Dose Metronomic Chemotherapy  2072-6694  Cancers  Publication: JournalArticle (Originalarbeit in einer wissenschaftlichen Zeitschrift) 

Cooperations ()

  ID Kreditinhaber Kooperationspartner Institution Laufzeit - von Laufzeit - bis
2354617  Zavolan, Mihaela  Lund, Anders H.  University of Copenhagen  01.10.2013  30.09.2017 
2354619  Zavolan, Mihaela  Huarte, Maite  University of Navarra (FIMA)  01.10.2013  30.09.2017 
2354620  Zavolan, Mihaela  Agami, Reuven  NKI The Netherlands Cancer Institute  01.10.2013  30.09.2017 
2354623  Zavolan, Mihaela  Landthaler, Markus  Max-Delbrück-Center for Molecular Medicine (MDC)  01.10.2013  30.09.2017 
2354624  Zavolan, Mihaela  Kanduri, Chandrasekhar  Gothenburg University  01.10.2013  30.09.2017 
2354626  Zavolan, Mihaela  Svoboda, Petr  Institute of Molecular Genetics of the ASCR  01.10.2013  30.09.2017 
2354628  Zavolan, Mihaela  Bozzoni, Irene  Universita Degli Studi di Roma la Sapienza  01.10.2013  30.09.2017 
2354630  Zavolan, Mihaela  Meister, Gunter  University of Regensburg  01.10.2013  30.12.2030 
2354631  Zavolan, Mihaela  Hannus, Stefan  Intana Bioscience GmbH  01.10.2013  30.09.2017 
2354633  Zavolan, Mihaela  Schnack Nielsen, Boye  Bioneer A/S  01.10.2013  30.09.2017 
   

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