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NeuroStemX - Systems Biology of Mammalian Forebrain Development
Third-party funded project
Project title NeuroStemX - Systems Biology of Mammalian Forebrain Development
Principal Investigator(s) Taylor, Verdon
Co-Investigator(s) van Nimwegen, Erik
Atanasoski, Suzana
Project Members Berninger, Philipp
Breda, Jeremie
Grobecker, Pascal
Organisation / Research unit Departement Biomedizin / Embryology and Stem Cell Biology (Taylor),
Departement Biomedizin / Cellular Neurobiology (Atanasoski),
Departement Biozentrum / Bioinformatics (van Nimwegen)
Project Website http://www.systemsx.ch/projects/research-technology-and-development-projects/neurostemx/
Project start 01.03.2013
Probable end 28.02.2017
Status Completed
Abstract

In this project we will address stem cell heterogeneity during the development of cerebral cortex and the signaling pathways controlling their fate to predict and model the processes of cortical development. Minor changes in coordination and aberrations in these networks may lead to developmental defects with profound effects on brain integrity and function.

The mammalian brain is the most complex organ in the animal kingdom. The cerebral cortex controls complex functions including cognition, motor coordination and memory. The increase in the complexity of the cerebral cortex across species has paralleled and probably driven the increased cognitive function throughout evolution.

Stem cell potential and cortical development control

A thin sheet of neural stem cells in the embryo generate the cerebral cortex which contains billions of cells and hundreds of functionally distinct neuron types organized into precise networks. The maintenance of stem cell potential and the control of cortical development are regulated by dynamic signaling pathways organized in space and time. Changes in these key networks control the regimental differentiation and fate specification of neural stem cells required to form the precise structures of the cerebral cortex.

Understanding brain formation and aberrant development

We are combining state-of-the-art computation modeling, high-resolution small sample gene profiling, and cell culture to analyze neural stem cell differentiation and address the mechanisms of forebrain development. A detailed understanding of the dynamic interplay between transcriptional networks and their upstream regulators which may arise from this project will help our understanding brain formation and aberrant development and may enable the generation of defined cortical neuron populations.

Financed by Swiss Government (Research Cooperations)

Published results ()

  ID Autor(en) Titel ISSN / ISBN Erschienen in Art der Publikation
4487357  Rzepiela, Andrzej J.; Ghosh, Souvik; Breda, Jeremie; Vina-Vilaseca, Arnau; Syed, Afzal P.; Gruber, Andreas J.; Eschbach, Katja; Beisel, Christian; van Nimwegen, Erik; Zavolan, Mihaela  Single-cell mRNA profiling reveals the hierarchical response of miRNA targets to miRNA induction  1744-4292  Molecular systems biology  Publication: JournalArticle (Originalarbeit in einer wissenschaftlichen Zeitschrift) 
3775473  Artimo, Panu; Duvaud, Séverine; Pachkov, Mikhail; Ioannidis, Vassilios; van Nimwegen, Erik; Stockinger, Heinz  The ISMARA client  2046-1402  F1000Research  Publication: JournalArticle (Originalarbeit in einer wissenschaftlichen Zeitschrift) 
4596343  Mukhtar, Tanzila; Breda, Jeremie; Grison, Alice; Karimaddini, Zahra; Grobecker, Pascal; Iber, Dagmar; Beisel, Christian; van Nimwegen, Erik; Taylor, Verdon  Tead transcription factors differentially regulate cortical development  2045-2322  Scientific Reports  Publication: JournalArticle (Originalarbeit in einer wissenschaftlichen Zeitschrift) 
4652863  Mukhtar, Tanzila; Breda, Jeremie; Adam, Manal A.; Boareto, Marcelo; Grobecker, Pascal; Karimaddini, Zahra; Grison, Alice; Eschbach, Katja; Chandrasekhar, Ramakrishnan; Vermeul, Swen; Okoniewski, Michal; Pachkov, Mikhail; Harwell, Corey C.; Atanasoski, Suzana; Beisel, Christian; Iber, Dagmar; van Nimwegen, Erik; Taylor, Verdon  Temporal and sequential transcriptional dynamics define lineage shifts in corticogenesis  0261-4189 ; 1460-2075  The EMBO Journal  Publication: JournalArticle (Originalarbeit in einer wissenschaftlichen Zeitschrift) 

Cooperations ()

  ID Kreditinhaber Kooperationspartner Institution Laufzeit - von Laufzeit - bis
2310617  van Nimwegen, Erik; Taylor, Verdon  Beisel, Christian  D-BSSE, ETH-Z  01.03.2013  28.02.2017 
2310619  van Nimwegen, Erik; Taylor, Verdon  Iber, Dagmar  D-BSSE, ETH-Z  01.03.2013  28.02.2017 
2310621  van Nimwegen, Erik; Taylor, Verdon  Tay, Savas  D-BSSE, ETH-Z  01.03.2013  28.02.2017 
   

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