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An easy way to include weak alignment constraints into NMR structure calculations
JournalArticle (Originalarbeit in einer wissenschaftlichen Zeitschrift)
 
ID 155798
Author(s) Sass, H. J.; Musco, G.; Stahl, S. J.; Wingfield, P. T.; Grzesiek, S.
Author(s) at UniBasel Grzesiek, Stephan
Year 2001
Title An easy way to include weak alignment constraints into NMR structure calculations
Journal Journal of Biomolecular NMR
Volume 21
Number 3
Pages / Article-Number 275-280
Keywords orientation, protein, pseudo-inverse, residual tensorial coupling, structure calculation
Abstract We have recently shown that an energy penalty for the incorporation of residual tensorial constraints into molecular structure calculations can be formulated without the explicit knowledge of the Saupe orientation tensor (Moltke and Grzesiek. J. Biomol. NMR, 1999, 15, 77-82). Here we report the implementation of such an algorithm into the program X-PLOR. The new algorithm is easy to use and has good convergence properties. The algorithm is used for the structure refinement of the HIV-1 Nef protein using 252 dipolar coupling restraints. The approach is compared to the conventional penalty function with explicit knowledge of the orientation tensor's amplitude and rhombicity. No significant differences are found with respect to speed, Ramachandran core quality or coordinate precision.
Publisher Springer
ISSN/ISBN 0925-2738 ; 1573-5001
edoc-URL http://edoc.unibas.ch/dok/A5258800
Full Text on edoc Available
Digital Object Identifier DOI 10.1023/A:1012998006281
ISI-Number WOS:000172383300008
Document type (ISI) Article
 
   

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