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Publications

Showing records 1 - 20 (of 56)

Publication: JournalArticle (Originalarbeit in einer wissenschaftlichen Zeitschrift)

ID Author Year Title Publisher
4694722  Goig, G. A.; Menardo, F.; Salaam-Dreyer, Z.; Dippenaar, A.; Streicher, E. M.; Daniels, J.; Reuter, A.; Borrell, S.; Reinhard, M.; Doetsch, A.; Beisel, C.; Warren, R. M.; Cox, H.; Gagneux, S. 2023 Effect of compensatory evolution in the emergence and transmission of rifampicin-resistant Mycobacterium tuberculosis in Cape Town, South Africa: a genomic epidemiology study Lancet Microbe
4665606  Zwyer, M.; Rutaihwa, L. K.; Windels, E.; Hella, J.; Menardo, F.; Sasamalo, M.; Sommer, G.; Schmülling, L.; Borrell, S.; Reinhard, M.; Dötsch, A.; Hiza, H.; Stritt, C.; Sikalengo, G.; Fenner, L.; De Jong, B. C.; Kato-Maeda, M.; Jugheli, L.; Ernst, J. D.; Niemann, S.; Jeljeli, L.; Ballif, M.; Egger, M.; Rakotosamimanana, N.; Yeboah-Manu, D.; Asare, P.; Malla, B.; Dou, H. Y.; Zetola, N.; Wilkinson, R. J.; Cox, H.; Carter, E. J.; Gnokoro, J.; Yotebieng, M.; Gotuzzo, E.; Abimiku, A.; Avihingsanon, A.; Xu, Z. M.; Fellay, J.; Portevin, D.; Reither, K.; Stadler, T.; Gagneux, S.; Brites, D. 2023 Back-to-Africa introductions of Mycobacterium tuberculosis as the main cause of tuberculosis in Dar es Salaam, Tanzania PLoS Pathog
4651521  Cox, H.; Goig, G. A.; Salaam-Dreyer, Z.; Dippenaar, A.; Reuter, A.; Mohr-Holland, E.; Daniels, J.; Cudahy, P. G. T.; Nicol, M. P.; Borrell, S.; Reinhard, M.; Doetsch, A.; Beisel, C.; Gagneux, S.; Warren, R. M.; Furin, J. 2022 Whole genome sequencing has the potential to improve treatment for rifampicin-resistant tuberculosis in high burden settings: a retrospective cohort study Journal of clinical microbiology
4651925  Xu, Z. M.; Rüeger, S.; Zwyer, M.; Brites, D.; Hiza, H.; Reinhard, M.; Rutaihwa, L.; Borrell, S.; Isihaka, F.; Temba, H.; Maroa, T.; Naftari, R.; Hella, J.; Sasamalo, M.; Reither, K.; Portevin, D.; Gagneux, S.; Fellay, J. 2022 Using population-specific add-on polymorphisms to improve genotype imputation in underrepresented populations PLoS Comput Biol
4651709  Maghradze, N.; Jugheli, L.; Borrell, S.; Tukvadze, N.; Kempker, R. R.; Blumberg, H. M.; Gagneux, S. 2022 Developing customized stepwise MIRU-VNTR typing for tuberculosis surveillance in Georgia PLoS One
4651727  Merker, M.; Rasigade, J. P.; Barbier, M.; Cox, H.; Feuerriegel, S.; Kohl, T. A.; Shitikov, E.; Klaos, K.; Gaudin, C.; Antoine, R.; Diel, R.; Borrell, S.; Gagneux, S.; Nikolayevskyy, V.; Andres, S.; Crudu, V.; Supply, P.; Niemann, S.; Wirth, T. 2022 Transcontinental spread and evolution of Mycobacterium tuberculosis W148 European/Russian clade toward extensively drug resistant tuberculosis Nat Commun
4646072  Trauner, A.; Banaei-Esfahani, A.; Gygli, S. M.; Warmer, P.; Feldmann, J.; Zampieri, M.; Borrell, S.; Collins, B. C.; Beisel, C.; Aebersold, R.; Gagneux, S. 2021 Expression dysregulation as a mediator of fitness costs in antibiotic resistance Antimicrob Agents Chemother
4646007  Zürcher, K.; Reichmuth, M. L.; Ballif, M.; Loiseau, C.; Borrell, S.; Reinhard, M.; Skrivankova, V.; Hömke, R.; Sander, P.; Avihingsanon, A.; Abimiku, A. G.; Marcy, O.; Collantes, J.; Carter, E. J.; Wilkinson, R. J.; Cox, H.; Yotebieng, M.; Huebner, R.; Fenner, L.; Böttger, E. C.; Gagneux, S.; Egger, M. 2021 Mortality from drug-resistant tuberculosis in high-burden countries comparing routine drug susceptibility testing with whole-genome sequencing: a multicentre cohort study Lancet Microbe
4646256  Menardo, F.; Rutaihwa, L. K.; Zwyer, M.; Borrell, S.; Comas, I.; Conceicao, E. C.; Coscolla, M.; Cox, H.; Joloba, M.; Dou, H. Y.; Feldmann, J.; Fenner, L.; Fyfe, J.; Gao, Q.; Garcia de Viedma, D.; Garcia-Basteiro, A. L.; Gygli, S. M.; Hella, J.; Hiza, H.; Jugheli, L.; Kamwela, L.; Kato-Maeda, M.; Liu, Q.; Ley, S. D.; Loiseau, C.; Mahasirimongkol, S.; Malla, B.; Palittapongarnpim, P.; Rakotosamimanana, N.; Rasolofo, V.; Reinhard, M.; Reither, K.; Sasamalo, M.; Silva Duarte, R.; Sola, C.; Suffys, P.; Batista Lima, K. V.; Yeboah-Manu, D.; Beisel, C.; Brites, D.; Gagneux, S. 2021 Local adaptation in populations of Mycobacterium tuberculosis endemic to the Indian Ocean Rim F1000Res
4646463  Cox, H.; Salaam-Dreyer, Z.; Goig, G. A.; Nicol, M. P.; Menardo, F.; Dippenaar, A.; Mohr-Holland, E.; Daniels, J.; Cudahy, P. G. T.; Borrell, S.; Reinhard, M.; Dötsch, A.; Beisel, C.; Reuter, A.; Furin, J.; Gagneux, S.; Warren, R. M. 2021 Potential contribution of HIV during first-line tuberculosis treatment to subsequent rifampicin-monoresistant tuberculosis and acquired tuberculosis drug resistance in South Africa: a retrospective molecular epidemiology study Lancet Microbe
4646467  Coscolla, M.; Gagneux, S.; Menardo, F.; Loiseau, C.; Ruiz-Rodriguez, P.; Borrell, S.; Otchere, I. D.; Asante-Poku, A.; Asare, P.; Sanchez-Buso, L.; Gehre, F.; Sanoussi, C. N.; Antonio, M.; Affolabi, D.; Fyfe, J.; Beckert, P.; Niemann, S.; Alabi, A. S.; Grobusch, M. P.; Kobbe, R.; Parkhill, J.; Beisel, C.; Fenner, L.; Bottger, E. C.; Meehan, C. J.; Harris, S. R.; de Jong, B. C.; Yeboah-Manu, D.; Brites, D. 2021 Phylogenomics of; Mycobacterium africanum; reveals a new lineage and a complex evolutionary history Microb Genom
4646539  Asare, P.; Osei-Wusu, S.; Baddoo, N. A.; Bedeley, E.; Otchere, I. D.; Brites, D.; Loiseau, C.; Asante-Poku, A.; Prah, D. A.; Borrell, S.; Reinhard, M.; Omari, M. A.; Forson, A.; Koram, K. A.; Gagneux, S.; Yeboah-Manu, D. 2021 Genomic epidemiological analysis identifies high relapse among individuals with recurring tuberculosis and provides evidence of household recent TB transmission in Ghana Int J Infect Dis
4646135  Salaam-Dreyer, Z.; Streicher, E. M.; Sirgel, F. A.; Menardo, F.; Borrell, S.; Reinhard, M.; Doetsch, A.; Cudahy, P. G. T.; Mohr-Holland, E.; Daniels, J.; Dippenaar, A.; Nicol, M. P.; Gagneux, S.; Warren, R. M.; Cox, H. 2021 Rifampicin mono-resistant tuberculosis is not the same as multidrug-resistant tuberculosis: a descriptive study from Khayelitsha, South Africa Antimicrob Agents Chemother
4646490  Castro, R. A. D.; Borrell, S.; Gagneux, S. 2021 The within-host evolution of antimicrobial resistance in Mycobacterium tuberculosis FEMS microbiology reviews
4597078  Øyås, Ove; Borrell, Sonia; Trauner, Andrej; Zimmermann, Michael; Feldmann, Julia; Liphardt, Thomas; Gagneux, Sebastien; Stelling, Jörg; Sauer, Uwe; Zampieri, Mattia 2020 Model-based integration of genomics and metabolomics reveals SNP functionality in Mycobacterium tuberculosis Proceedings of the National Academy of Sciences of the United States of America
4652566  Reichmuth, M. L.; Homke, R.; Zürcher, K.; Sander, P.; Avihingsanon, A.; Collantes, J.; Loiseau, C.; Borrell, S.; Reinhard, M.; Wilkinson, R. J.; Yotebieng, M.; Fenner, L.; Böttger, E. C.; Gagneux, S.; Egger, M.; Keller, P. M.; International epidemiology Databases to Evaluate Aids, 2020 Natural polymorphisms in Mycobacterium tuberculosis conferring resistance to delamanid in drug-naïve patients Antimicrob Agents Chemother
4652536  Loiseau, C.; Brites, D.; Reinhard, M.; Zurcher, K.; Borrell, S.; Ballif, M.; Fenner, L.; Cox, H.; Rutaihwa, L. K.; Wilkinson, R. J.; Yotebieng, M.; Carter, E. J.; Abimiku, A.; Marcy, O.; Gotuzzo, E.; Avihingsanon, A.; Zetola, N.; Doulla, B.; Bottger, E. C.; Egger, M.; Gagneux, S. 2020 HIV coinfection is associated with low fitness rpoB variants in rifampicin-resistant Mycobacterium tuberculosis Antimicrobial agents and chemotherapy
4598808  Asare, Prince; Otchere, Isaac Darko; Bedeley, Edmund; Brites, Daniela; Loiseau, Chloé; Baddoo, Nyonuku Akosua; Asante-Poku, Adwoa; Osei-Wusu, Stephen; Prah, Diana Ahu; Borrell, Sonia; Reinhard, Miriam; Forson, Audrey; Koram, Kwadwo Ansah; Gagneux, Sebastien; Yeboah-Manu, Dorothy 2020 Whole genome sequencing and spatial analysis identifies recent tuberculosis transmission hotspots in Ghana Frontiers in medicine
4499876  Zürcher, Kathrin; Ballif, Marie; Fenner, Lukas; Borrell, Sonia; Keller, Peter M.; Gnokoro, Joachim; Marcy, Olivier; Yotebieng, Marcel; Diero, Lameck; Carter, E. Jane; Rockwood, Neesha; Wilkinson, Robert J.; Cox, Helen; Ezati, Nicholas; Abimiku, Alash'le G.; Collantes, Jimena; Avihingsanon, Anchalee; Kawkitinarong, Kamon; Reinhard, Miriam; Hömke, Rico; Huebner, Robin; Gagneux, Sebastien; Böttger, Erik C.; Egger, Matthias; International epidemiology Databases to Evaluate Aids consortium, 2019 Drug susceptibility testing and mortality in patients treated for tuberculosis in high-burden countries : a multicentre cohort study The Lancet infectious diseases
4501009  Rutaihwa, Liliana K.; Sasamalo, Mohamed; Jaleco, Aladino; Hella, Jerry; Kingazi, Ally; Kamwela, Lujeko; Kingalu, Amri; Malewo, Bryceson; Shirima, Raymond; Doetsch, Anna; Feldmann, Julia; Reinhard, Miriam; Borrell, Sonia; Brites, Daniela; Reither, Klaus; Doulla, Basra; Fenner, Lukas; Gagneux, Sebastien 2019 Insights into the genetic diversity of Mycobacterium tuberculosis in Tanzania PLoS ONE
Showing records 1 - 20 (of 56)


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13/05/2024