Data Entry: Please note that the research database will be replaced by UNIverse by the end of October 2023. Please enter your data into the system https://universe-intern.unibas.ch. Thanks

Login for users with Unibas email account...

Login for registered users without Unibas email account...

 

Publications

Showing records 1 - 19 (of 19)

Publication: JournalArticle (Originalarbeit in einer wissenschaftlichen Zeitschrift)

ID Author Year Title Publisher
4462735  Gruber, Andreas J.; Schmidt, Ralf; Ghosh, Souvik; Martin, Georges; Gruber, Andreas R.; van Nimwegen, Erik; Zavolan, Mihaela 2018 Discovery of physiological and cancer-related regulators of 3' UTR processing with KAPAC Genome biology
4487372  Gruber, Andreas J.; Gypas, Foivos; Riba, Andrea; Schmidt, Ralf; Zavolan, Mihaela 2018 Terminal exon characterization with TECtool reveals an abundance of cell-specific isoforms Nature methods
4487357  Rzepiela, Andrzej J.; Ghosh, Souvik; Breda, Jeremie; Vina-Vilaseca, Arnau; Syed, Afzal P.; Gruber, Andreas J.; Eschbach, Katja; Beisel, Christian; van Nimwegen, Erik; Zavolan, Mihaela 2018 Single-cell mRNA profiling reveals the hierarchical response of miRNA targets to miRNA induction Molecular systems biology
3975704  Martin, Georges; Schmidt, Ralf; Gruber, Andreas J.; Ghosh, Souvik; Keller, Walter; Zavolan, Mihaela 2017 3' End Sequencing Library Preparation with A-seq2 Journal of Visualized Experiments
3822861  Dimitrova, Yoana; Gruber, Andreas J.; Mittal, Nitish; Ghosh, Souvik; Dimitriades, Beatrice; Mathow, Daniel; Grandy, William Aaron; Christofori, Gerhard; Zavolan, Mihaela 2017 TFAP2A is a component of the ZEB1/2 network that regulates TGFB1-induced epithelial to mesenchymal transition Biology Direct
3567622  Gruber, Andreas J.; Schmidt, Ralf; Gruber, Andreas R.; Martin, Georges; Ghosh, Souvik; Belmadani, Manuel; Keller, Walter; Zavolan, Mihaela 2016 A comprehensive analysis of 3' end sequencing data sets reveals novel polyadenylation signals and the repressive role of heterogeneous ribonucleoprotein C on cleavage and polyadenylation Genome Research
3589708  Jorjani, Hadi; Kehr, Stephanie; Jedlinski, Dominik J.; Gumienny, Rafal; Hertel, Jana; Stadler, Peter F.; Zavolan, Mihaela; Gruber, Andreas R. 2016 An updated human snoRNAome Nucleic Acids Research
3499763  Janowski, Robert; Heinz, Gitta A; Schlundt, Andreas; Wommelsdorf, Nina; Brenner, Sven; Gruber, Andreas R; Blank, Michael; Buch, Thorsten; Buhmann, Raymund; Zavolan, Mihaela; Niessing, Dierk; Heissmeyer, Vigo; Sattler, Michael 2016 Roquin recognizes a non-canonical hexaloop structure in the 3'-UTR of Ox40 Nature communications
3208069  Kanitz, Alexander; Gypas, Foivos; Gruber, Andreas J; Gruber, Andreas R; Martin, Georges; Zavolan, Mihaela 2015 Comparative assessment of methods for the computational inference of transcript isoform abundance from RNA-seq data Genome biology
2420414  Balwierz, Piotr J; Pachkov, Mikhail; Arnold, Phil; Gruber, Andreas J; Zavolan, Mihaela; van Nimwegen, Erik 2014 ISMARA: Automated modeling of genomic signals as a democracy of regulatory motifs Genome research
2730701  Schönemann, Lars; Kühn, Uwe; Martin, Georges; Schäfer, Peter; Gruber, Andreas R; Keller, Walter; Zavolan, Mihaela; Wahle, Elmar 2014 Reconstitution of CPSF active in polyadenylation: recognition of the polyadenylation signal by WDR33 Genes & development
2730703  Gruber, Andreas R 2014 RNA Polymerase III promoter screen uncovers a novel noncoding RNA family conserved in Caenorhabditis and other clade V nematodes Gene
2664019  Gruber, Andreas J.; Grandy, William A.; Balwierz, Piotr J.; Dimitrova, Yoana A.; Pachkov, Mikhail; Ciaudo, Constance; van Nimwegen, Erik; Zavolan, Mihaela 2014 Embryonic stem cell-specific microRNAs contribute to pluripotency by inhibiting regulators of multiple differentiation pathways Nucleic Acids Research
2799813  Dill, Michael T.; Makowska, Zuzanna; Trincucci, Gaia; Gruber, Andreas J.; Vogt, Julia E.; Filipowicz, Magdalena; Calabrese, Diego; Krol, Ilona; Lau, Daryl T.; Terracciano, Luigi; van Nimwegen, Erik; Roth, Volker; Heim, Markus H. 2014 Pegylated IFN-α regulates hepatic gene expression through transient Jak/STAT activation Journal of Clinical Investigation
2055453  Kishore, Shivendra; Gruber, Andreas R; Jedlinski, Dominik J; Syed, Afzal P; Jorjani, Hadi; Zavolan, Mihaela 2013 Insights into snoRNA biogenesis and processing from PAR-CLIP of snoRNA core proteins and small RNA sequencing Genome biology
2261959  Gruber, Andreas R.; Martin, Georges; Keller, Walter; Zavolan, Mihaela 2013 Means to an end: mechanisms of alternative polyadenylation of messenger RNA precursors Wiley Interdisciplinary Reviews. RNA
2055452  Zünd, David; Gruber, Andreas R; Zavolan, Mihaela; Mühlemann, Oliver 2013 Translation-dependent displacement of UPF1 from coding sequences causes its enrichment in 3' UTRs Nature structural & molecular biology
1471067  Gruber, Andreas R.; Martin, Georges; Keller, Walter; Zavolan, Mihaela 2012 Cleavage factor Im is a key regulator of 3' UTR length RNA Biology
1213457  Martin, Georges; Gruber, Andreas R.; Keller, Walter; Zavolan, Mihaela 2012 Genome-wide Analysis of Pre-mRNA 3′ End Processing Reveals a Decisive Role of Human Cleavage Factor I in the Regulation of 3′ UTR Length Cell Reports
Showing records 1 - 19 (of 19)


MCSS v5.8 PRO. 0.007 sec, queries - 0.000 sec ©Universität Basel  |  Impressum   |    
28/03/2024