Uni Basel Research Database

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Publications

Showing records 21 - 40 (of 197)

Publication: JournalArticle (Originalarbeit in einer wissenschaftlichen Zeitschrift)

ID	Author	Year	Title	Publisher
4646384	Guimarães, A. E. D. S.; Sharma, A.; Furlaneto, I. P.; Rutaihwa, L.; Cardoso, J. F.; da Conceição, M. L.; Spinassé, L. B.; Machado, E.; Lopes, M. L.; Duarte, R. S.; Gagneux, S.; Suffys, P. N.; Lima, K. V. B.; Conceição, E. C.	2021	Evaluation of drug susceptibility profile of; Mycobacterium tuberculosis; lineage 1 from Brazil based on whole genome sequencing and phenotypic methods	MemoÌ�rias do Instituto Oswaldo Cruz
4646377	Haraka, F.; Kakolwa, M.; Schumacher, S. G.; Nathavitharana, R. R.; Denkinger, C. M.; Gagneux, S.; Reither, K.; Ross, A.	2021	Impact of the diagnostic test Xpert MTB/RIF on patient outcomes for tuberculosis (Review)	Cochrane Database Syst Rev
4646368	Hiza, H.; Hella, J.; Arbués, A.; Magani, B.; Sasamalo, M.; Gagneux, S.; Reither, K.; Portevin, D.	2021	Case-control diagnostic accuracy study of a non-sputum CD38-based TAM-TB test from a single milliliter of blood	Sci Rep
4646007	Zürcher, K.; Reichmuth, M. L.; Ballif, M.; Loiseau, C.; Borrell, S.; Reinhard, M.; Skrivankova, V.; Hömke, R.; Sander, P.; Avihingsanon, A.; Abimiku, A. G.; Marcy, O.; Collantes, J.; Carter, E. J.; Wilkinson, R. J.; Cox, H.; Yotebieng, M.; Huebner, R.; Fenner, L.; Böttger, E. C.; Gagneux, S.; Egger, M.	2021	Mortality from drug-resistant tuberculosis in high-burden countries comparing routine drug susceptibility testing with whole-genome sequencing: a multicentre cohort study	Lancet Microbe
4646256	Menardo, F.; Rutaihwa, L. K.; Zwyer, M.; Borrell, S.; Comas, I.; Conceicao, E. C.; Coscolla, M.; Cox, H.; Joloba, M.; Dou, H. Y.; Feldmann, J.; Fenner, L.; Fyfe, J.; Gao, Q.; Garcia de Viedma, D.; Garcia-Basteiro, A. L.; Gygli, S. M.; Hella, J.; Hiza, H.; Jugheli, L.; Kamwela, L.; Kato-Maeda, M.; Liu, Q.; Ley, S. D.; Loiseau, C.; Mahasirimongkol, S.; Malla, B.; Palittapongarnpim, P.; Rakotosamimanana, N.; Rasolofo, V.; Reinhard, M.; Reither, K.; Sasamalo, M.; Silva Duarte, R.; Sola, C.; Suffys, P.; Batista Lima, K. V.; Yeboah-Manu, D.; Beisel, C.; Brites, D.; Gagneux, S.	2021	Local adaptation in populations of Mycobacterium tuberculosis endemic to the Indian Ocean Rim	F1000Res
4646463	Cox, H.; Salaam-Dreyer, Z.; Goig, G. A.; Nicol, M. P.; Menardo, F.; Dippenaar, A.; Mohr-Holland, E.; Daniels, J.; Cudahy, P. G. T.; Borrell, S.; Reinhard, M.; Dötsch, A.; Beisel, C.; Reuter, A.; Furin, J.; Gagneux, S.; Warren, R. M.	2021	Potential contribution of HIV during first-line tuberculosis treatment to subsequent rifampicin-monoresistant tuberculosis and acquired tuberculosis drug resistance in South Africa: a retrospective molecular epidemiology study	Lancet Microbe
4646079	Ticlla, M. R.; Hella, J.; Hiza, H.; Sasamalo, M.; Mhimbira, F.; Rutaihwa, L. K.; Droz, S.; Schaller, S.; Reither, K.; Hilty, M.; Comas, I.; Beisel, C.; Schmid, C. D.; Fenner, L.; Gagneux, S.	2021	The sputum microbiome in pulmonary tuberculosis and its association with disease manifestations: a cross-sectional study	Front Microbiol
4646294	Ley, S. D.; Pillay, S.; Streicher, E. M.; van der Heijden, Y. F.; Sirgel, F.; Derendinger, B.; de Kock, M.; Gagneux, S.; Warren, R. M.; Theron, G.; de Vos, M.	2021	Melting the eis: non-detection of kanamycin resistance markers by routine diagnostic tests and identification of new eis-promoter variants	Antimicrob Agents Chemother
4646191	Osei-Wusu, S.; Otchere, I. D.; Morgan, P.; Musah, A. B.; Siam, I. M.; Asandem, D.; Afum, T.; Asare, P.; Asante-Poku, A.; Kusi, K. A.; Gagneux, S.; Yeboah-Manu, D.	2021	Genotypic and phenotypic diversity of Mycobacterium tuberculosis complex genotypes prevalent in West Africa	PLoS One
4646467	Coscolla, M.; Gagneux, S.; Menardo, F.; Loiseau, C.; Ruiz-Rodriguez, P.; Borrell, S.; Otchere, I. D.; Asante-Poku, A.; Asare, P.; Sanchez-Buso, L.; Gehre, F.; Sanoussi, C. N.; Antonio, M.; Affolabi, D.; Fyfe, J.; Beckert, P.; Niemann, S.; Alabi, A. S.; Grobusch, M. P.; Kobbe, R.; Parkhill, J.; Beisel, C.; Fenner, L.; Bottger, E. C.; Meehan, C. J.; Harris, S. R.; de Jong, B. C.; Yeboah-Manu, D.; Brites, D.	2021	Phylogenomics of; Mycobacterium africanum; reveals a new lineage and a complex evolutionary history	Microb Genom
4646366	Hockings, K. J.; Mubemba, B.; Avanzi, C.; Pleh, K.; Dux, A.; Bersacola, E.; Bessa, J.; Ramon, M.; Metzger, S.; Patrono, L. V.; Jaffe, J. E.; Benjak, A.; Bonneaud, C.; Busso, P.; Couacy-Hymann, E.; Gado, M.; Gagneux, S.; Johnson, R. C.; Kodio, M.; Lynton-Jenkins, J.; Morozova, I.; Mätz-Rensing, K.; Regalla, A.; Said, A. R.; Schuenemann, V. J.; Sow, S. O.; Spencer, J. S.; Ulrich, M.; Zoubi, H.; Cole, S. T.; Wittig, R. M.; Calvignac-Spencer, S.; Leendertz, F. H.	2021	Leprosy in wild chimpanzees	Nature
4646249	Minja, L. T.; Hella, J.; Mbwambo, J.; Nyandindi, C.; Omary, U. S.; Levira, F.; Mpagama, S.; Shimwela, M.; Okuma, J.; Gagneux, S.; Bruce, R. D.; Reither, K.	2021	High burden of tuberculosis infection and disease among people receiving medication-assisted treatment for substance use disorder in Tanzania	PLoS One
4646539	Asare, P.; Osei-Wusu, S.; Baddoo, N. A.; Bedeley, E.; Otchere, I. D.; Brites, D.; Loiseau, C.; Asante-Poku, A.; Prah, D. A.; Borrell, S.; Reinhard, M.; Omari, M. A.; Forson, A.; Koram, K. A.; Gagneux, S.; Yeboah-Manu, D.	2021	Genomic epidemiological analysis identifies high relapse among individuals with recurring tuberculosis and provides evidence of household recent TB transmission in Ghana	Int J Infect Dis
4646128	Sanoussi, C. N.; Coscolla, M.; Ofori-Anyinam, B.; Otchere, I. D.; Antonio, M.; Niemann, S.; Parkhill, J.; Harris, S.; Yeboah-Manu, D.; Gagneux, S.; Rigouts, L.; Affolabi, D.; de Jong, B. C.; Meehan, C. J.	2021	Mycobacterium tuberculosis complex lineage 5 exhibits high levels of within-lineage genomic diversity and differing gene content compared to the type strain H37Rv	Microb Genom
4646242	Moreno-Molina, M.; Shubladze, N.; Khurtsilava, I.; Avaliani, Z.; Bablishvili, N.; Torres-Puente, M.; Villamayor, L.; Gabrielian, A.; Rosenthal, A.; Vilaplana, C.; Gagneux, S.; Kempker, R. R.; Vashakidze, S.; Comas, I.	2021	Genomic analyses of Mycobacterium tuberculosis from human lung resections reveal a high frequency of polyclonal infections	Nat Commun
4646135	Salaam-Dreyer, Z.; Streicher, E. M.; Sirgel, F. A.; Menardo, F.; Borrell, S.; Reinhard, M.; Doetsch, A.; Cudahy, P. G. T.; Mohr-Holland, E.; Daniels, J.; Dippenaar, A.; Nicol, M. P.; Gagneux, S.; Warren, R. M.; Cox, H.	2021	Rifampicin mono-resistant tuberculosis is not the same as multidrug-resistant tuberculosis: a descriptive study from Khayelitsha, South Africa	Antimicrob Agents Chemother
4646257	Menardo, F.; Gagneux, S.; Freund, F.	2021	Multiple merger genealogies in outbreaks of Mycobacterium tuberculosis	Molecular biology and evolution
4646490	Castro, R. A. D.; Borrell, S.; Gagneux, S.	2021	The within-host evolution of antimicrobial resistance in Mycobacterium tuberculosis	FEMS microbiology reviews
4652503	Haraka, F.; Schumacher, S. G.; Ross, A.; Mantsoki, A.; Gagneux, S.; Reither, K.; Denkinger, C. M.	2020	Effect of history of tuberculosis on specificity of Xpert MTB/RIF	Eur Respir J
4529576	Castro, Rhastin A. D.; Ross, Amanda; Kamwela, Lujeko; Reinhard, Miriam; Loiseau, Chloé; Feldmann, Julia; Borrell, Sonia; Trauner, Andrej; Gagneux, Sebastien	2020	The genetic background modulates the evolution of fluoroquinolone-resistance in Mycobacterium tuberculosis	Molecular biology and evolution

Showing records 21 - 40 (of 197)

05/05/2024

Research Database / FORSCHUNGSDATENBANK